Jatropha Genome Database
- JcCA0309141.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0309141.10 - phase: 0 /pseudo/partial
(233 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);... 152 2e-37
AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB... 149 1e-36
AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB... 149 1e-36
AT4G35650.1 | Symbols: | isocitrate dehydrogenase, putative / N... 149 1e-36
AT5G03290.1 | Symbols: | isocitrate dehydrogenase, putative / N... 101 4e-22
AT3G09810.1 | Symbols: | isocitrate dehydrogenase, putative / N... 100 1e-21
AT1G32480.1 | Symbols: | oxidoreductase/ oxidoreductase, acting... 97 8e-21
AT1G80560.1 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 56 2e-08
AT1G31180.1 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 55 3e-08
AT5G14200.3 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 55 4e-08
AT5G14200.1 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 55 4e-08
>AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);
isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting
on the CH-OH group of donors, NAD or NADP as acceptor |
chr4:16774494-16776233 REVERSE
Length = 367
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 73/88 (82%)
Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
LNNRKKVTAVHKANIMKLADGLFLESCREV+ KYP I YNEIIVDNCCMQLV+KPEQFDV
Sbjct: 190 LNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAKPEQFDV 249
Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
MVTPNLYGNLV VMPGG
Sbjct: 250 MVTPNLYGNLVANTAAGIAGGTGVMPGG 277
>AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
oxidoreductase, acting on the CH-OH group of donors, NAD
or NADP as acceptor | chr2:7461062-7462466 REVERSE
Length = 367
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 73/88 (82%)
Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
LNNRKKVTAVHKANIMKLADGLFLESC+EV+ KYP I YNEIIVDNCCMQLV++PEQFDV
Sbjct: 190 LNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDV 249
Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
MVTPNLYGNLV VMPGG
Sbjct: 250 MVTPNLYGNLVANTAAGIAGGTGVMPGG 277
>AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
oxidoreductase, acting on the CH-OH group of donors, NAD
or NADP as acceptor | chr2:7461062-7462466 REVERSE
Length = 363
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 73/88 (82%)
Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
LNNRKKVTAVHKANIMKLADGLFLESC+EV+ KYP I YNEIIVDNCCMQLV++PEQFDV
Sbjct: 186 LNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDV 245
Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
MVTPNLYGNLV VMPGG
Sbjct: 246 MVTPNLYGNLVANTAAGIAGGTGVMPGG 273
>AT4G35650.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative |
chr4:16908584-16909973 FORWARD
Length = 368
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 72/88 (81%)
Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
LNNRKKVTAVHKANIMKLADGLFLESCREV+ Y GI YNEIIVDNCCMQLV+KPEQFDV
Sbjct: 191 LNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDV 250
Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
MVTPNLYGNL+ VMPGG
Sbjct: 251 MVTPNLYGNLIANTAAGIAGGTGVMPGG 278
>AT5G03290.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative | chr5:794043-795939
FORWARD
Length = 374
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 56/70 (80%)
Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
+ R++V+A+HKANIM+ DGLFL+ CREV+ KYP I Y E+++DNCCM LV P FDV+
Sbjct: 202 HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVL 261
Query: 178 VTPNLYGNLV 187
V PNLYG+++
Sbjct: 262 VMPNLYGDII 271
>AT3G09810.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative |
chr3:3008753-3011070 FORWARD
Length = 374
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 56/70 (80%)
Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
+ RKKV+A+HKANIM+ DGLFL+ C EV++KYP I Y ++++DNCCM LV P FDV+
Sbjct: 202 HGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMMLVKNPALFDVL 261
Query: 178 VTPNLYGNLV 187
V PNLYG+++
Sbjct: 262 VMPNLYGDII 271
>AT1G32480.1 | Symbols: | oxidoreductase/ oxidoreductase, acting on
the CH-OH group of donors, NAD or NADP as acceptor |
chr1:11741083-11741727 FORWARD
Length = 214
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 104 STRSFLVLLKALSLNNRKKVTAVHK-ANIMKLADGLFLESCREVSSKYPGIKYNEIIVDN 162
S R + + RKKVTAVH KLAD FLESC+EV+ YP I YNEI ++N
Sbjct: 132 SDRIAKYAFEYAHFSKRKKVTAVHNNGKYEKLADAFFLESCQEVAKMYPNITYNEIGINN 191
Query: 163 CCMQLVSKPEQFDVMVTPNLYG 184
CC+QLV KPE+FDV+VTPNLYG
Sbjct: 192 CCLQLVEKPERFDVIVTPNLYG 213
>AT1G80560.1 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr1:30287833-30290126 FORWARD
Length = 405
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
R K+ +V KAN+++ A L+ + ++S+YP ++ + + VDN MQLV P+QFD +VT
Sbjct: 224 RGKLCSVDKANVLE-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVT 282
Query: 180 PNLYGNLV 187
N++G+++
Sbjct: 283 NNIFGDIL 290
>AT1G31180.1 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr1:11142843-11144617 REVERSE
Length = 404
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
R K+ +V KAN++ A L+ + ++S+YP ++ + + VDN MQLV P+QFD +VT
Sbjct: 225 RGKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVT 283
Query: 180 PNLYGNLV 187
N++G+++
Sbjct: 284 NNIFGDIL 291
>AT5G14200.3 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr5:4576220-4577962 FORWARD
Length = 388
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
R K+ +V KAN++ A L+ + ++S+YP ++ + + VDN MQL+ P+QFD +VT
Sbjct: 228 RGKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVT 286
Query: 180 PNLYGNLV 187
N++G+++
Sbjct: 287 NNIFGDIL 294
>AT5G14200.1 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr5:4576220-4578111 FORWARD
Length = 409
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 120 RKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVT 179
R K+ +V KAN++ A L+ + ++S+YP ++ + + VDN MQL+ P+QFD +VT
Sbjct: 228 RGKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVT 286
Query: 180 PNLYGNLV 187
N++G+++
Sbjct: 287 NNIFGDIL 294