Jatropha Genome Database

JcCA0309091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309091.20 + phase: 1 /TE
         (146 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00240.1 | Symbols: ORF111A | hypothetical protein | chrM:689...    51   3e-07
AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    48   3e-06

>ATMG00240.1 | Symbols: ORF111A | hypothetical protein |
           chrM:68918-69253 REVERSE
          Length = 111

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 48  SMTGPNISFGVQQVSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNA 107
           ++T P+++F V ++SQF        +QA   +L Y++GT   GLF+  +S   + A+ ++
Sbjct: 4   TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADS 63

Query: 108 DXATC-----TVTPLVSQCVLYLLAQGSISKS 134
           D A+C     +VT   S   L+ L  G++ KS
Sbjct: 64  DWASCPDTRRSVTGFCSLVPLWFL--GALRKS 93


>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 47/115 (40%)

Query: 1   LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
           LL + GL    P   P+       +  G                    +T  +ISF V +
Sbjct: 342 LLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNK 401

Query: 61  VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATCTVT 115
           +SQF + P   H QA + +L Y++GT   GLF+   +   +  + +A   +C  T
Sbjct: 402 LSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDT 456