Jatropha Genome Database

JcCA0308991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308991.10 - phase: 0 /partial
         (211 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) | chr1:16228661-...   265   2e-71
AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) | ...   248   2e-66
AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) | chr2:8690614-8...   246   7e-66
AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001638-8...   233   5e-62
AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001320-8...   233   6e-62

>AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) |
           chr1:16228661-16231158 REVERSE
          Length = 261

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/225 (61%), Positives = 157/225 (69%), Gaps = 15/225 (6%)

Query: 1   MPEEKEESTSIPLSHAENGGEEPEDPAKXXXXXXXXXTRE--------------MTGCVV 46
           M E KE +TS  LS      ++P+D  K         TR+              MTG VV
Sbjct: 1   MAEGKEATTS-SLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVV 59

Query: 47  LFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXXWIGSNV 106
           LFP+AVTF ITWW IQFVDGFFSPIYE LG+DI                     W+GS V
Sbjct: 60  LFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTV 119

Query: 107 FWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFGFITSTV 166
           FWLGE FI+RMPFV+H+YSASKQIS AISP QNTTAFKEVAIIRHPRIGEYAFGFITS+V
Sbjct: 120 FWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSV 179

Query: 167 ILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
            LQ D+ +EELCSV+VPTNHLYIGD+FLV+S++IIRPNLSIREGI
Sbjct: 180 TLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGI 224


>AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) |
           chr2:8687568-8689321 REVERSE
          Length = 268

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 134/171 (78%)

Query: 41  MTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXX 100
           MTGCV+L PIA+TF+ITWW I FVDGFFSPIY +LGI++                     
Sbjct: 68  MTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFIFLVGVFMSS 127

Query: 101 WIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFG 160
           W+G++V  LGEWFIKRMPFVRH+Y+ASKQIS AISP QNT AFKEVAIIRHPR+GEYAFG
Sbjct: 128 WLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFG 187

Query: 161 FITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FITSTV+LQ    +EELC V+VPTNHLYIGD+ LVNS D+IRPNLS+REGI
Sbjct: 188 FITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGI 238


>AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) |
           chr2:8690614-8692234 REVERSE
          Length = 256

 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 132/171 (77%)

Query: 41  MTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXX 100
           MTGCV+L PIAVTF+ TWW I FVDGFFSPIY  LGI+I                     
Sbjct: 58  MTGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSS 117

Query: 101 WIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFG 160
           W+G++V  LGEWFIKRMPFVRH+Y+ASKQIS AISP QNT AFKEVAIIRHPR+GEYAFG
Sbjct: 118 WLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFG 177

Query: 161 FITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FITSTV+LQ    +EELC V+VPTNHLYIGDI LVNS D+IRPNLS+REGI
Sbjct: 178 FITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGI 228


>AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001638-8002854 FORWARD
          Length = 213

 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 131/173 (75%)

Query: 39  REMTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXX 98
           + MTGCV+L PIAVTF+ TWW I FVDGFFSPIY  LGI++                   
Sbjct: 17  KFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFGLGFVTSITFIFMVGVFM 76

Query: 99  XXWIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYA 158
             W+G++V  +GEWFIK+MP V ++YSASKQIS AISP Q++ AFKEVAIIRHP +GEYA
Sbjct: 77  SSWLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPDQSSGAFKEVAIIRHPHMGEYA 136

Query: 159 FGFITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FGFITSTVIL+     EELC V+VPTNHLY+GDIFL++SKDIIRPNLS+REGI
Sbjct: 137 FGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGI 189


>AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001320-8002810 FORWARD
          Length = 251

 Score =  233 bits (594), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 130/171 (76%)

Query: 41  MTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIXXXXXXXXXXXXXXXXXXXXX 100
           MTGCV+L PIAVTF+ TWW I FVDGFFSPIY  LGI++                     
Sbjct: 58  MTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFGLGFVTSITFIFMVGVFMSS 117

Query: 101 WIGSNVFWLGEWFIKRMPFVRHLYSASKQISAAISPAQNTTAFKEVAIIRHPRIGEYAFG 160
           W+G++V  +GEWFIK+MP V ++YSASKQIS AISP Q++ AFKEVAIIRHP +GEYAFG
Sbjct: 118 WLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPDQSSGAFKEVAIIRHPHMGEYAFG 177

Query: 161 FITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGI 211
           FITSTVIL+     EELC V+VPTNHLY+GDIFL++SKDIIRPNLS+REGI
Sbjct: 178 FITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGI 228