Jatropha Genome Database

JcCA0308861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308861.10 + phase: 0 /partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52370.3 | Symbols:  | ribosomal protein L22 family  protein ...   264   3e-71
AT1G52370.2 | Symbols:  | ribosomal protein L22 family  protein ...   264   3e-71
AT1G52370.1 | Symbols:  | ribosomal protein L22 family  protein ...   264   3e-71
AT4G28360.1 | Symbols:  | ribosomal protein L22 family  protein ...   264   3e-71
ATCG00810.1 | Symbols: RPL22 | encodes a chloroplast ribosomal p...    52   4e-07

>AT1G52370.3 | Symbols:  | ribosomal protein L22 family  protein |
           chr1:19507052-19508699 FORWARD
          Length = 269

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 159/196 (81%), Gaps = 6/196 (3%)

Query: 1   GISSSRKLLAGSSEETPVHSPLT-PALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKK 59
           GIS+SR+L AG   E PV SPL+ PAL  L SG  +EQ+ + K   VQAVLK IKQSPKK
Sbjct: 65  GISTSRQLQAG---EEPVSSPLSSPAL--LGSGKEEEQKIIPKRQKVQAVLKSIKQSPKK 119

Query: 60  LNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFV 119
           +NLVAALVRGMRVEDAL+QLQ+T+KRAS+TVY+VIH+ARANATHNHGLDPDRLLVAEAFV
Sbjct: 120 VNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 179

Query: 120 GKGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQL 179
           GKG F K+ +YHAKGR+GI   P CRL            A+IARL+VHNF+KL+KR+RQL
Sbjct: 180 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLNKRQRQL 239

Query: 180 VPHKLIETTPIWNRKG 195
           VPHKLIET+PIWNR+G
Sbjct: 240 VPHKLIETSPIWNRRG 255


>AT1G52370.2 | Symbols:  | ribosomal protein L22 family  protein |
           chr1:19507052-19508699 FORWARD
          Length = 269

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 159/196 (81%), Gaps = 6/196 (3%)

Query: 1   GISSSRKLLAGSSEETPVHSPLT-PALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKK 59
           GIS+SR+L AG   E PV SPL+ PAL  L SG  +EQ+ + K   VQAVLK IKQSPKK
Sbjct: 65  GISTSRQLQAG---EEPVSSPLSSPAL--LGSGKEEEQKIIPKRQKVQAVLKSIKQSPKK 119

Query: 60  LNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFV 119
           +NLVAALVRGMRVEDAL+QLQ+T+KRAS+TVY+VIH+ARANATHNHGLDPDRLLVAEAFV
Sbjct: 120 VNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 179

Query: 120 GKGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQL 179
           GKG F K+ +YHAKGR+GI   P CRL            A+IARL+VHNF+KL+KR+RQL
Sbjct: 180 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLNKRQRQL 239

Query: 180 VPHKLIETTPIWNRKG 195
           VPHKLIET+PIWNR+G
Sbjct: 240 VPHKLIETSPIWNRRG 255


>AT1G52370.1 | Symbols:  | ribosomal protein L22 family  protein |
           chr1:19507052-19508699 FORWARD
          Length = 269

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 159/196 (81%), Gaps = 6/196 (3%)

Query: 1   GISSSRKLLAGSSEETPVHSPLT-PALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKK 59
           GIS+SR+L AG   E PV SPL+ PAL  L SG  +EQ+ + K   VQAVLK IKQSPKK
Sbjct: 65  GISTSRQLQAG---EEPVSSPLSSPAL--LGSGKEEEQKIIPKRQKVQAVLKSIKQSPKK 119

Query: 60  LNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFV 119
           +NLVAALVRGMRVEDAL+QLQ+T+KRAS+TVY+VIH+ARANATHNHGLDPDRLLVAEAFV
Sbjct: 120 VNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 179

Query: 120 GKGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQL 179
           GKG F K+ +YHAKGR+GI   P CRL            A+IARL+VHNF+KL+KR+RQL
Sbjct: 180 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLNKRQRQL 239

Query: 180 VPHKLIETTPIWNRKG 195
           VPHKLIET+PIWNR+G
Sbjct: 240 VPHKLIETSPIWNRRG 255


>AT4G28360.1 | Symbols:  | ribosomal protein L22 family  protein |
           chr4:14029294-14030926 REVERSE
          Length = 271

 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 160/206 (77%), Gaps = 6/206 (2%)

Query: 1   GISSSRKLLAGSSEETPVHSPLT-PALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKK 59
           GIS+SR+L A    E PV SPL+ PAL  L SG  +EQ+ + K   VQAVLK IKQSPKK
Sbjct: 66  GISTSRQLQAS---EEPVSSPLSSPAL--LGSGKEEEQKIIPKRQKVQAVLKSIKQSPKK 120

Query: 60  LNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFV 119
           +NLVAALVRGMRVEDAL+QLQ+T+KRA++TVY+VIH+ARANATHNHGLDPDRLLVAEAFV
Sbjct: 121 VNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 180

Query: 120 GKGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQL 179
           GKG F K+ +YHAKGR+GI   P CRL            A+IARL+VHNF+K SKRERQL
Sbjct: 181 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFKKKSKRERQL 240

Query: 180 VPHKLIETTPIWNRKGKAAGREPSAV 205
           VPHKLIET+PIWNR+G  A    S +
Sbjct: 241 VPHKLIETSPIWNRRGTKANHRSSEL 266


>ATCG00810.1 | Symbols: RPL22 | encodes a chloroplast ribosomal
           protein L22, a constituent of the large subunit of the
           ribosomal complex | chrC:83467-83949 REVERSE
          Length = 160

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%)

Query: 44  STVQAVLKGIKQSPKKLNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATH 103
           + V A+ + I  S  K   V   +RG   E+AL+ L+L   R    ++++++SA ANA+H
Sbjct: 11  TEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASH 70

Query: 104 NHGLDPDRLLVAEAFVGKGFFKKRTSYHAKGRAGIKVRPECRL 146
           N G     L++++A V +G   K+    A+GR+    R  C +
Sbjct: 71  NKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHI 113