Jatropha Genome Database

JcCA0308681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308681.20 + phase: 0 /partial
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24380.1 | Symbols:  | unknown protein | chr4:12612554-126135...   205   8e-54
AT5G65400.1 | Symbols:  | unknown protein | chr5:26131448-261330...   186   6e-48
AT4G24380.2 | Symbols:  | unknown protein | chr4:12612554-126133...   135   1e-32
AT1G09280.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    54   3e-08

>AT4G24380.1 | Symbols:  | unknown protein | chr4:12612554-12613586
           FORWARD
          Length = 234

 Score =  205 bits (522), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 119/149 (79%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           EFTEYTNF++CL Y+ED MI  GPFDGL+GFSQGAILS GL GLQAKG+A + VPKIKF+
Sbjct: 76  EFTEYTNFEKCLEYLEDRMIKLGPFDGLIGFSQGAILSGGLPGLQAKGIAFQKVPKIKFV 135

Query: 61  IIIGGAKFKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHPKGHT 120
           IIIGGAK KS  +AE AY+S ++  S+HFLGETDFLKP+G +L+ES+  PVV+HHPKGHT
Sbjct: 136 IIIGGAKLKSAKLAENAYSSSLETLSLHFLGETDFLKPYGTQLIESYKNPVVVHHPKGHT 195

Query: 121 IPRLDETSQETMLSFIKKIENTLPHSDAT 149
           +PRLDE S E + +FI  +E+ +   D  
Sbjct: 196 VPRLDEKSLEKVTAFIDTLEHLVMEEDKN 224


>AT5G65400.1 | Symbols:  | unknown protein | chr5:26131448-26133062
           FORWARD
          Length = 252

 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 109/147 (74%), Gaps = 5/147 (3%)

Query: 2   FTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFLI 61
           F EY NF+ECLAYIED+MI +GPFDGLLGFSQGA L+A + G+Q +G AL  VPK+KFL+
Sbjct: 95  FKEYRNFEECLAYIEDYMIKNGPFDGLLGFSQGAFLTAAIPGMQEQGSALTKVPKVKFLV 154

Query: 62  IIGGAK-----FKSPSVAEKAYASPIQCASIHFLGETDFLKPHGLELLESFVEPVVIHHP 116
           II GAK     F  P  A  A++SP++C S+HF+GE DFLK  G  L+ESFVEPVVIHH 
Sbjct: 155 IISGAKIPGLMFGEPKAAVNAFSSPVRCPSLHFIGERDFLKIEGEVLVESFVEPVVIHHS 214

Query: 117 KGHTIPRLDETSQETMLSFIKKIENTL 143
            GH IP+LD  ++ETMLSF + I   L
Sbjct: 215 GGHIIPKLDTKAEETMLSFFQSIRQML 241


>AT4G24380.2 | Symbols:  | unknown protein | chr4:12612554-12613310
           FORWARD
          Length = 171

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 76/91 (83%)

Query: 1   EFTEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFL 60
           EFTEYTNF++CL Y+ED MI  GPFDGL+GFSQGAILS GL GLQAKG+A + VPKIKF+
Sbjct: 76  EFTEYTNFEKCLEYLEDRMIKLGPFDGLIGFSQGAILSGGLPGLQAKGIAFQKVPKIKFV 135

Query: 61  IIIGGAKFKSPSVAEKAYASPIQCASIHFLG 91
           IIIGGAK KS  +AE AY+S ++  S+HFLG
Sbjct: 136 IIIGGAKLKSAKLAENAYSSSLETLSLHFLG 166


>AT1G09280.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763),
           Protein of unknown function DUF341 (InterPro:IPR005645);
           BEST Arabidopsis thaliana protein match is:
           rhodanese-like domain-containing protein
           (TAIR:AT2G40760.1); Has 4342 Blast hits to 4339 proteins
           in 940 species: Archae - 0; Bacteria - 1695; Metazoa -
           138; Fungi - 282; Plants - 108; Viruses - 0; Other
           Eukaryotes - 2119 (source: NCBI BLink). |
           chr1:2998209-3001253 REVERSE
          Length = 581

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 3   TEYTNFDECLAYIEDFMINHGPFDGLLGFSQGAILSAGLAGLQAKGVALKNVPKIKFLII 62
           T+   FD+ L Y++      GPFDG+LGFSQGA ++A + G Q + V      +I F   
Sbjct: 443 TQTEGFDKSLTYLKTAFEEKGPFDGILGFSQGAAMAAAVCGKQEQLVG-----EIDFRFC 497

Query: 63  IGGAKFKSPSVAEKAYASPIQCASIHFLG-----ETDFLKPHGLELLESFVE--PVVIHH 115
           +  + F    + E      I+C S+H  G     +   +     +L   F +    ++ H
Sbjct: 498 VLCSGFTPWPLLEMKEKRSIKCPSLHIFGSQPGKDRQIVTQASSDLAGLFEDGCATIVEH 557

Query: 116 PKGHTIP 122
             GH IP
Sbjct: 558 DFGHIIP 564