Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (226 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37360.1 | Symbols:  | unknown protein | chr5:14805437-148081...   189   2e-48

>AT5G37360.1 | Symbols:  | unknown protein | chr5:14805437-14808113
           REVERSE
          Length = 309

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 107/154 (69%), Gaps = 9/154 (5%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           PSDYF+QLP DLRLDLNDAAFDLSNGPVIDECGQELGE LLNLSRAWE ADTSTSR L  
Sbjct: 86  PSDYFQQLPNDLRLDLNDAAFDLSNGPVIDECGQELGETLLNLSRAWEQADTSTSRSLVE 145

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           KLP LE          FGKRL+SAG+RFQ MGQY +GE+QK+A+AMI TG +LSA     
Sbjct: 146 KLPELEILLTDGARSAFGKRLISAGKRFQGMGQYAKGELQKIAKAMITTGGVLSAKTSSV 205

Query: 191 XXXXXXXXXXRVFKFWRTSGCSHSXESYIGAAIA 224
                     R+FKF          ++Y GAAIA
Sbjct: 206 SVSNESKSGTRMFKFGELQVAVTPEKAYTGAAIA 239