Jatropha Genome Database

JcCA0308351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308351.20 - phase: 0 /pseudo/partial
         (220 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60880.1 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synth...   307   3e-84
AT3G60880.2 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synth...   307   3e-84
AT2G45440.1 | Symbols: DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE SYNT...   302   1e-82

>AT3G60880.1 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synthase
           1 (DHDPS1) (DHDPS) (DHPS1) | chr3:22495086-22496542
           FORWARD
          Length = 364

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 161/176 (91%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVP RT QDIPP VI   +Q+PN+AGVKEC+GN+RVE+YTEKGIVVWSGNDD+CH
Sbjct: 189 PTIIYNVPGRTCQDIPPQVIFKLSQNPNMAGVKECVGNNRVEEYTEKGIVVWSGNDDQCH 248

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           D+RW HGATGVISV SNLVPGLMRKLM EG++ ALN+KLLPL+ WLFQEPNPIG+NTALA
Sbjct: 249 DSRWDHGATGVISVTSNLVPGLMRKLMFEGRNSALNAKLLPLMDWLFQEPNPIGVNTALA 308

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGV RPVFRLPYVPLPL KRIEFV LVK IGRE+FVG++DVQVL+DDDF+L+GRY
Sbjct: 309 QLGVARPVFRLPYVPLPLSKRIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY 364


>AT3G60880.2 | Symbols: DHDPS, DHDPS1 | dihydrodipicolinate synthase
           1 (DHDPS1) (DHDPS) (DHPS1) | chr3:22495086-22496542
           FORWARD
          Length = 365

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 161/176 (91%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVP RT QDIPP VI   +Q+PN+AGVKEC+GN+RVE+YTEKGIVVWSGNDD+CH
Sbjct: 190 PTIIYNVPGRTCQDIPPQVIFKLSQNPNMAGVKECVGNNRVEEYTEKGIVVWSGNDDQCH 249

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           D+RW HGATGVISV SNLVPGLMRKLM EG++ ALN+KLLPL+ WLFQEPNPIG+NTALA
Sbjct: 250 DSRWDHGATGVISVTSNLVPGLMRKLMFEGRNSALNAKLLPLMDWLFQEPNPIGVNTALA 309

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGV RPVFRLPYVPLPL KRIEFV LVK IGRE+FVG++DVQVL+DDDF+L+GRY
Sbjct: 310 QLGVARPVFRLPYVPLPLSKRIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY 365


>AT2G45440.1 | Symbols: DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE
           SYNTHASE); catalytic/ dihydrodipicolinate synthase/
           lyase | chr2:18731294-18732867 FORWARD
          Length = 365

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 157/176 (89%)

Query: 45  PTIIYNVPSRTGQDIPPGVIHSAAQSPNLAGVKECMGNDRVEQYTEKGIVVWSGNDDECH 104
           PTIIYNVP RTGQDIPP  I   +Q+PNLAGVKEC+GN RVE+YTE G+VVWSGNDDECH
Sbjct: 190 PTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEYTENGVVVWSGNDDECH 249

Query: 105 DARWSHGATGVISVASNLVPGLMRKLMIEGKDPALNSKLLPLIRWLFQEPNPIGLNTALA 164
           D+RW +GATGVISV SNLVPGLMRKLM EG++ +LNSKLLPL+ WLF EPNPIG+NTALA
Sbjct: 250 DSRWDYGATGVISVTSNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALA 309

Query: 165 QLGVVRPVFRLPYVPLPLPKRIEFVNLVKAIGRENFVGEQDVQVLEDDDFMLVGRY 220
           QLGV RPVFRLPYVPLPL KR+EFV LVK IGRE+FVGE+DVQ L+DDDF+L+GRY
Sbjct: 310 QLGVSRPVFRLPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 365