Jatropha Genome Database

JcCA0308281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.20 - phase: 0 
         (154 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52370.1 | Symbols:  | unknown protein | chr5:21260558-212612...   160   4e-40
AT5G58990.1 | Symbols:  | unknown protein | chr5:23815028-238158...   151   1e-37

>AT5G52370.1 | Symbols:  | unknown protein | chr5:21260558-21261203
           REVERSE
          Length = 142

 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query: 1   MATSLTNKTSVTNQTLSLFRLSFNFIKSFXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVA 60
           MA +L N+     +T+  FRLS N +++F                         NL EVA
Sbjct: 1   MAMTLINRAISRTETVGAFRLSLNLLRNFSAAPASENPSSDSSKPKRRKKK---NLIEVA 57

Query: 61  QFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKKISGVH 120
           QFLPNWGIGYHMAK+HW  +SYEITKINLYKDGRHGKAWGI +KDG  AAE PKKISGVH
Sbjct: 58  QFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISGVH 117

Query: 121 KRCWRYIPSLT 131
           KRCW+YIP+L+
Sbjct: 118 KRCWKYIPNLS 128


>AT5G58990.1 | Symbols:  | unknown protein | chr5:23815028-23815819
           FORWARD
          Length = 148

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 87/134 (64%), Gaps = 3/134 (2%)

Query: 1   MATSLTNKTSVTNQTLSLFRLSFNFIKSFXXXXXXXXXXXX---XXXXXXXXXXXXXNLF 57
           MA +L N+     +T+  F LS + +++F                            NL 
Sbjct: 1   MAMTLMNRAISRTETVGAFSLSLSLLRNFSAAPSAASTPASENPSSDSNKPKRRKKKNLI 60

Query: 58  EVAQFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKKIS 117
           EVAQFLPNWGIGYHMAK+HW  +SYEITKINLYKDGRHGKAWGI +KDG  AAE PKKIS
Sbjct: 61  EVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKIS 120

Query: 118 GVHKRCWRYIPSLT 131
           GVHKRCW+YIP+L+
Sbjct: 121 GVHKRCWKYIPNLS 134