Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (195 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43130.1 | Symbols: TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR...    78   3e-15
AT1G27720.1 | Symbols: TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTO...    60   8e-10

>AT5G43130.1 | Symbols: TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR
           4); transcription initiation factor |
           chr5:17315608-17321144 REVERSE
          Length = 823

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 69/136 (50%), Gaps = 14/136 (10%)

Query: 51  AKSVKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSA 110
           +K VK N+++DDK                     KWQLMAE ARQ+        S S++ 
Sbjct: 698 SKGVKGNKEDDDKMRTTAANVAARAAVGGDDAFLKWQLMAE-ARQK--------SVSEAG 748

Query: 111 KDVGHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQ--VMQISVARTISVKDVIAV 168
           KD      S  G+N KD Q+               +GKNQ   +Q  V RTISVKDV+AV
Sbjct: 749 KDGNQKTTSGGGKNSKDRQD---GGRRFSGTGGRRVGKNQGSSLQPKVVRTISVKDVVAV 805

Query: 169 LEREPQMSKSNLICRL 184
           LEREPQMSKS L+ RL
Sbjct: 806 LEREPQMSKSTLMYRL 821


>AT1G27720.1 | Symbols: TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTOR
           4B); transcription initiation factor |
           chr1:9643351-9647376 REVERSE
          Length = 720

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 34/137 (24%)

Query: 54  VKTNRDEDDKXXXXXXXXXXXXXXXXXXXLSKWQLMAEQARQRREGGNEATSSSQSAKDV 113
           VK N+ ++DK                    SKW+LMAE ARQR   G             
Sbjct: 616 VKANKKDEDKERAKAANVAVRAAVGGDDRFSKWKLMAE-ARQRSSPGP------------ 662

Query: 114 GHNPRSTSGRNMKDNQEPEKXXXXXXXXXXXNLGKNQVMQISVARTISVKDVIAVLEREP 173
           G N +  SG                        GKNQ +   V R+ISVKDVIAV+E+EP
Sbjct: 663 GRNSKKLSG--------------------GTQFGKNQGLP-KVVRSISVKDVIAVVEKEP 701

Query: 174 QMSKSNLICRLHERTGS 190
           QMS+S L+ R++ R  S
Sbjct: 702 QMSRSTLLYRVYNRICS 718