Jatropha Genome Database

JcCA0308071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308071.10 - phase: 2 /pseudo/partial
         (304 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63100.1 | Symbols:  | scarecrow transcription factor family ...    53   2e-07
AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW); protein bind...    52   5e-07

>AT1G63100.1 | Symbols:  | scarecrow transcription factor family
           protein | chr1:23399391-23401367 REVERSE
          Length = 658

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 203 KFCHKSNLVILLQTXPYWKPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPP 262
           KF H +   +LL      + FEG+  +H+ID  +  GL    QW +    LA  S  NPP
Sbjct: 366 KFIHFTANEMLL------RAFEGKERVHIIDFDIKQGL----QWPSFFQSLA--SRINPP 413

Query: 263 KRLRITGVGNSGERLEAIGNELECYARCMGFNNLEF 298
             +RITG+G S   L   G+ L  +A  M   NL+F
Sbjct: 414 HHVRITGIGESKLELNETGDRLHGFAEAM---NLQF 446


>AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW); protein binding
           / protein homodimerization/ sequence-specific DNA
           binding / transcription factor | chr3:20070550-20072625
           FORWARD
          Length = 653

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 223 FEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAIGN 282
           FE E S+H+IDL +  GL    QW  L H LA+      P  +R+TG+G S E L+A G 
Sbjct: 395 FEKEDSVHIIDLDIMQGL----QWPGLFHILASRPGG--PPHVRLTGLGTSMEALQATGK 448

Query: 283 ELECYARCMGF 293
            L  +A  +G 
Sbjct: 449 RLSDFADKLGL 459