Jatropha Genome Database
- JcCA0307901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0307901.20 + phase: 0
(202 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72530.1 | Symbols: | plastid developmental protein DAG, put... 204 3e-53
AT1G72530.2 | Symbols: | plastid developmental protein DAG, put... 198 1e-51
AT3G15000.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED I... 157 4e-39
AT3G06790.2 | Symbols: | plastid developmental protein DAG, put... 116 9e-27
AT3G06790.1 | Symbols: | plastid developmental protein DAG, put... 114 3e-26
AT1G11430.1 | Symbols: | plastid developmental protein DAG, put... 113 6e-26
AT1G53260.2 | Symbols: | unknown protein | chr1:19859406-198604... 108 2e-24
AT1G53260.1 | Symbols: | unknown protein | chr1:19859393-198604... 107 4e-24
AT2G35240.1 | Symbols: | plastid developmental protein DAG, put... 106 1e-23
AT1G32580.1 | Symbols: | plastid developmental protein DAG, put... 104 3e-23
AT2G33430.1 | Symbols: DAL1, DAL | DAL1 (DIFFERENTIATION AND GRE... 102 2e-22
AT5G44780.1 | Symbols: | unknown protein | chr5:18068100-180705... 79 1e-15
AT4G20020.1 | Symbols: | unknown protein | chr4:10844433-108460... 76 1e-14
AT4G20020.2 | Symbols: | unknown protein | chr4:10844360-108460... 75 2e-14
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 1e-07
>AT1G72530.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD
Length = 188
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 113/136 (83%)
Query: 46 NSPVTPRTELTRLPSILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAK 105
NS T +EL R+PS++E CDYKHWLV+M+ P YP R+ I+ +V+TLAMALGSEE+AK
Sbjct: 33 NSETTSWSELIRVPSLVEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAK 92
Query: 106 ESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
SIYSVSTKYYYAFGC + E LTYKI+SLPDVKWVLPDS++ G++ YGGEPF DGEVVP
Sbjct: 93 RSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVP 152
Query: 166 YDDKYHEDWVRNQINE 181
YD+KYH DW+R+Q +E
Sbjct: 153 YDEKYHADWLRDQTDE 168
>AT1G72530.2 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD
Length = 192
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 113/140 (80%), Gaps = 4/140 (2%)
Query: 46 NSPVTPRTELTRLPSILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAK 105
NS T +EL R+PS++E CDYKHWLV+M+ P YP R+ I+ +V+TLAMALGSEE+AK
Sbjct: 33 NSETTSWSELIRVPSLVEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAK 92
Query: 106 ESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYG----GEPFFDG 161
SIYSVSTKYYYAFGC + E LTYKI+SLPDVKWVLPDS++ G++ YG GEPF DG
Sbjct: 93 RSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDG 152
Query: 162 EVVPYDDKYHEDWVRNQINE 181
EVVPYD+KYH DW+R+Q +E
Sbjct: 153 EVVPYDEKYHADWLRDQTDE 172
>AT3G15000.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: plastid
developmental protein DAG, putative (TAIR:AT3G06790.2);
Has 50779 Blast hits to 24732 proteins in 941 species:
Archae - 10; Bacteria - 4862; Metazoa - 25623; Fungi -
7071; Plants - 6957; Viruses - 900; Other Eukaryotes -
5356 (source: NCBI BLink). | chr3:5050321-5052121
FORWARD
Length = 395
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%)
Query: 61 ILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFG 120
+L+ CD++HWLVV+E P+ P RDEII+ Y+KTLA +GSE++A+ IYSVST+ YYAFG
Sbjct: 91 LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150
Query: 121 CNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVPYDDKYHEDWV 175
VSE+L++K+K L +V+WVLPDSYL YGGEPF DG+ VPYD KYHE+W+
Sbjct: 151 ALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWI 205
>AT3G06790.2 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE
Length = 244
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 72/105 (68%)
Query: 61 ILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFG 120
+L+ CDY+HWL+VME P +E+IN YVKTL LG EE+AK+ IYSV T Y FG
Sbjct: 88 LLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGCEEEAKKKIYSVCTSTYTGFG 147
Query: 121 CNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
+SE L+ K+K+LP V WVLPDSYL YGG+ + +G+V+P
Sbjct: 148 ALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192
>AT3G06790.1 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE
Length = 244
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 72/105 (68%)
Query: 61 ILEDCDYKHWLVVMEAPKEYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFG 120
+L+ CDY+HWL+VME P +E+IN YVKTL LG +E+AK+ IYSV T Y FG
Sbjct: 88 LLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYTGFG 147
Query: 121 CNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
+SE L+ K+K+LP V WVLPDSYL YGG+ + +G+V+P
Sbjct: 148 ALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192
>AT1G11430.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:3847273-3848938 FORWARD
Length = 232
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 61 ILEDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAF 119
+L CDY HWL+VME PK+ P RD++I+ Y+ TLA LGS E+AK+++Y+ ST Y F
Sbjct: 81 MLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 140
Query: 120 GCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
C + E + K K LP V WVLPDSY+ YGG+ + +GE++P
Sbjct: 141 QCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIP 186
>AT1G53260.2 | Symbols: | unknown protein | chr1:19859406-19860421
REVERSE
Length = 230
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 56/73 (76%)
Query: 108 IYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVPYD 167
IYSVS K Y+AFG VSE+L++KIK LP VKWVLPDSYL YGGEPF DG+ VPYD
Sbjct: 3 IYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYD 62
Query: 168 DKYHEDWVRNQIN 180
KYHE+W+RN N
Sbjct: 63 PKYHEEWIRNNAN 75
>AT1G53260.1 | Symbols: | unknown protein | chr1:19859393-19860421
REVERSE
Length = 271
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 56/73 (76%)
Query: 108 IYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVPYD 167
IYSVS K Y+AFG VSE+L++KIK LP VKWVLPDSYL YGGEPF DG+ VPYD
Sbjct: 3 IYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYD 62
Query: 168 DKYHEDWVRNQIN 180
KYHE+W+RN N
Sbjct: 63 PKYHEEWIRNNAN 75
>AT2G35240.1 | Symbols: | plastid developmental protein DAG,
putative | chr2:14845099-14846262 REVERSE
Length = 232
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 56 TRLPSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTK 114
T + + CDY+HWL+VME P E + ++I+ YV+TLA +GSEE+A++ IY+VS +
Sbjct: 85 TEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCE 144
Query: 115 YYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
Y+ FGC + E + K++ LP V +VLPDSY+ YG E F +GEVVP
Sbjct: 145 RYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVP 195
>AT1G32580.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:11784108-11785430 FORWARD
Length = 229
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 56 TRLPSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTK 114
T + + CDY+HWL+VM+ P E + ++I+ YV+TLA +GSEE+AK+ IY+VS +
Sbjct: 82 TEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCE 141
Query: 115 YYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
Y+ FGC + E + K++ LP V ++LPDSY+ YG E F +GE+V
Sbjct: 142 RYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEIV 191
>AT2G33430.1 | Symbols: DAL1, DAL | DAL1 (DIFFERENTIATION AND
GREENING-LIKE 1) | chr2:14162732-14164729 FORWARD
Length = 219
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 56 TRLPSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTK 114
T + + CDY+HWL+VM+ P E + ++I+ Y++TLA +GSEE+AK+ IY+VS +
Sbjct: 73 TEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCE 132
Query: 115 YYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
Y FGC + E + K++ LP V +VLPDSY+ YG E F +GE+V
Sbjct: 133 RYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIV 182
>AT5G44780.1 | Symbols: | unknown protein | chr5:18068100-18070544
FORWARD
Length = 723
Score = 79.3 bits (194), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 63 EDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALG-SEEKAKESIYSVSTKYYYAFG 120
E CD+ HWL+ M PK+ P R+E+I+ + +T A L S E+AK+ IY++ T Y F
Sbjct: 78 EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQ 137
Query: 121 CNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
++ K + LP V++++PDSY+ YGG+ + +G + P
Sbjct: 138 ATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGDKYENGVITP 182
>AT4G20020.1 | Symbols: | unknown protein | chr4:10844433-10846085
REVERSE
Length = 419
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 54 ELTRLPSILEDCDYKHWLVVMEAPKEYPLR--DEIINRYVKTLAMALG-SEEKAKESIYS 110
E+T + E CDY HWL+ M+ KE + +E++ Y +T A LG S E+AK+ +Y+
Sbjct: 74 EITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYA 133
Query: 111 VSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
ST Y F ++E + K K LP V ++LPDSY+ YGG+ + +G +
Sbjct: 134 CSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVIT 187
>AT4G20020.2 | Symbols: | unknown protein | chr4:10844360-10846085
REVERSE
Length = 406
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 54 ELTRLPSILEDCDYKHWLVVMEAPKEYPLR--DEIINRYVKTLAMALG-SEEKAKESIYS 110
E+T + E CDY HWL+ M+ KE + +E++ Y +T A LG S E+AK+ +Y+
Sbjct: 74 EITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYA 133
Query: 111 VSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVV 164
ST Y F ++E + K K LP V ++LPDSY+ YGG+ + +G +
Sbjct: 134 CSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVIT 187
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 374
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 69 HWLVVMEAPKEY-PLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAFGCNVSENL 127
+W+V+++ P + + +++ YV+ LA LG+E+ A+ SIY S ++ F C++ E+
Sbjct: 72 YWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFCCHIDEDA 131
Query: 128 TYKIKSLPDVKWVLPDSYLCCGESSYG-----GEPFFDGEVVPY 166
+ ++ SLP V + P+ + +YG G FD V +
Sbjct: 132 SRQLASLPGVVSIRPEQDYSSEKKNYGIGSHKGVSLFDHGTVKH 175