Jatropha Genome Database

JcCA0307801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307801.10 + phase: 0 
         (510 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46100.1 | Symbols: ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE...   673   0.0  
AT5G03406.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/ h...   344   9e-95
AT3G02760.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/ h...   110   3e-24

>AT3G46100.1 | Symbols: ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE
           1); histidine-tRNA ligase | chr3:16928444-16930984
           REVERSE
          Length = 486

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/505 (67%), Positives = 391/505 (77%), Gaps = 21/505 (4%)

Query: 8   LHAVHPLISRLYA--KPLFLSFTNLSHSSLSLREFSLPRQSFPVKVRTLSSIASAAQXXX 65
           + A+H + +RL +  +P+ L   +L  S    R+FS+PR       R + + A+      
Sbjct: 1   MRAIHIVTTRLSSSFRPILL--LDLVSSCSPPRQFSIPR-------RLICAAANGGGRSG 51

Query: 66  XXXXXXXXXXXXXXXXXVLEEAVQKIDVNPPKGTRDFPPEEMRLRNWLFHNFREVSRLYG 125
                              E+  +KIDVNPPKGTRDFPPE+MRLRNWLF++F+EVSRLYG
Sbjct: 52  SIVAPLVTE----------EDFHKKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYG 101

Query: 126 FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVP 185
           +EEVD+PVLE+EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 
Sbjct: 102 YEEVDYPVLETEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 161

Query: 186 LPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPEVTAEAELISSIVTFFKRIGITAS 245
           LPLKWFA+GQCW           EHYQWNMDIIGVP+VTAEAELISSIVTFFKRIGITAS
Sbjct: 162 LPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPQVTAEAELISSIVTFFKRIGITAS 221

Query: 246 DVGFKVSSRKVLQEVLKCYSISENLFGKVCXXXXXXXXXXXXXXXXXLKSVGMSEEAVEE 305
           DVGFKVSSRKVLQE+LK Y + E+LFG+VC                 L   G+SE+A+E+
Sbjct: 222 DVGFKVSSRKVLQELLKKYGVPEDLFGRVCIIIDKIEKIPIDEIKKELGFTGISEDAIEQ 281

Query: 306 LLQVLSIKSLTKLEEILGGAGEAVADLKQLFSLAENFGYSEWIQFDASVVRGLAYYTGIV 365
           LLQVLS+KSL  LE+I+GGAGEA+ADLKQLFSLAE FGYSEWIQFDASVVRGLAYYTGIV
Sbjct: 282 LLQVLSVKSLDDLEDIIGGAGEAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIV 341

Query: 366 FEGFDREGKLRAICGGGRYDRLLSTFGGDDLPACGFGFGDAVIVXXXXXXXXXXXXXXQV 425
           FEGFDR+GKLRAICGGGRYDRLLST+GGDD PACGFGFGDAVIV              +V
Sbjct: 342 FEGFDRKGKLRAICGGGRYDRLLSTYGGDDFPACGFGFGDAVIVELLKEKDLLPELGQEV 401

Query: 426 ENIVCALDPDLQGAASTVATILREKGQTVDLVLENKPLKWVFKRAGRINAQRLILVGNTE 485
           ENIVCALD DLQGAA+TVAT LR+KGQTVDLVLE+KPLKWVFKRA R+NA+RL+LVG TE
Sbjct: 402 ENIVCALDKDLQGAAATVATALRDKGQTVDLVLESKPLKWVFKRAARVNARRLVLVGKTE 461

Query: 486 WQKGMVGVKILSSGEQYEVKLDELE 510
           W+ G V VK+LSSGEQ++VKL +LE
Sbjct: 462 WEDGSVSVKVLSSGEQFQVKLSDLE 486


>AT5G03406.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/
           histidine-tRNA ligase/ nucleotide binding |
           chr5:839966-841444 FORWARD
          Length = 263

 Score =  344 bits (882), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 175/271 (64%), Positives = 199/271 (73%), Gaps = 20/271 (7%)

Query: 5   LSSLHAVHPLISRLYAKPLFLSFTNLSHSSLSLREFSLPRQSFPVKVRTLSSIASAAQXX 64
           + ++H V   +S  + +P+ L F + S     LR+FS PR+      +      S +   
Sbjct: 1   MRAIHIVTTRLSSSFIRPVLLDFVSCS----PLRQFSTPRRFICAASKVNGGGRSGS--- 53

Query: 65  XXXXXXXXXXXXXXXXXXVLEEAVQKIDVNPPKGTRDFPPEEMRLRNWLFHNFREVSRLY 124
                             V+ E  Q IDVNPPKGTRDFPPE+MRLRNWLF++F+EVSRL+
Sbjct: 54  -------------IVAPLVVNEEFQNIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLF 100

Query: 125 GFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 184
           G+EEVDFPVLE+EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV
Sbjct: 101 GYEEVDFPVLETEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 160

Query: 185 PLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPEVTAEAELISSIVTFFKRIGITA 244
            LPLKWFAVGQCW           EHYQWNMDIIGVPEVTAEAELISSI+TFFKRIGITA
Sbjct: 161 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPEVTAEAELISSIMTFFKRIGITA 220

Query: 245 SDVGFKVSSRKVLQEVLKCYSISENLFGKVC 275
           SDVGFKVSSRKVLQE LK Y + E+LFG+VC
Sbjct: 221 SDVGFKVSSRKVLQEFLKKYGVPEDLFGRVC 251


>AT3G02760.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/
           histidine-tRNA ligase/ nucleotide binding |
           chr3:597588-600650 REVERSE
          Length = 883

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 19/322 (5%)

Query: 96  PKGTRDFPPEEMRLRNWLFHNFREVSRLYGFEEVDFPVLESEALFIRKAGEEIRDQLYCF 155
           PKGTRDF  E+M +R   F   + V + +G   +D PV E     + K GE+ +  +Y  
Sbjct: 449 PKGTRDFAKEQMAVREKAFSIIQNVFKRHGATALDTPVFELRETLMGKYGEDSK-LVYDI 507

Query: 156 EDRGNRRVALRPELTPSLARLVIQKGKSVPLPLKWFAVGQCWXXXXXXXXXXXEHYQWNM 215
            D+G    +LR +LT   AR V   G +     K + + + +           E YQ + 
Sbjct: 508 ADQGGELCSLRYDLTVPFARYVAMNGIT---SFKRYQIAKVYRRDNPSKGRYREFYQCDF 564

Query: 216 DIIGVPE-VTAEAELISSIVTFFKRIGITASDVGFKVSSRKVLQEVLKCYSISENLFGKV 274
           DI G+ E +  + E++  +      + I   D   K++ RK+L  +L+   +    F  +
Sbjct: 565 DIAGLFEPMGPDFEIVKILTELLDELEI--GDYEVKLNHRKLLDGMLEICGVPPEKFRTI 622

Query: 275 CXXXXXXXXXXXXXXXXXL-KSVGMSEEAVEELLQVLSIKS-----LTKLE----EILGG 324
           C                 + +  G+S E  + +   +  K      L+KL     E L  
Sbjct: 623 CSSIDKLDKQSFEQVKKEMVEEKGLSSEIADRIGNFVKEKGAPLELLSKLRQEGSEFLDN 682

Query: 325 AG--EAVADLKQLFSLAENFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGG 382
               EA+ +L  +F   +    SE I FD S+ RGL YYTG++FE      ++ +I  GG
Sbjct: 683 QSSREALDELSIMFEALKRSKCSERIVFDLSLARGLDYYTGVIFEAVCIGAEVGSIGAGG 742

Query: 383 RYDRLLSTFGGDDLPACGFGFG 404
           RYD L+  FG   +PA G   G
Sbjct: 743 RYDNLIGMFGTKQVPAVGMSLG 764