Jatropha Genome Database

JcCA0307751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307751.10 + phase: 0 /TE/partial
         (180 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-194737...   123   6e-29
AT1G34070.1 | Symbols:  | unknown protein | chr1:12402283-124032...    79   2e-15

>AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-19473770
           REVERSE
          Length = 369

 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)

Query: 4   SSTATEVDPRLRSQLDATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSR 63
           SST T +  +   + D  V  WIYGTI+  LL+TI++   TA++ W  L+ +F+DNK +R
Sbjct: 56  SSTPTPMTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEAR 115

Query: 64  ALYLENQFSHVLLDDFPNISAYCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGV 123
           AL  EN+     +DD  ++  YCQ+LK LSD L+NV +P+S++ LV+ L+ GL E YD +
Sbjct: 116 ALQFENELRTTTIDDL-SVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYI 174

Query: 124 ATIIQQSDPLPLFYEAXSKLILEE 147
             +I+   P P F EA S L++EE
Sbjct: 175 LNVIKHKSPFPSFTEARSMLLMEE 198


>AT1G34070.1 | Symbols:  | unknown protein | chr1:12402283-12403209
           FORWARD
          Length = 308

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 19  DATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLENQFSHVLLDD 78
           D  V   +YGT++         T ST+++ W R+K  F++NK++RAL L+++     + D
Sbjct: 69  DGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGD 128

Query: 79  FPNISAYCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPLFYE 138
              ++ Y +++K L+D L NV  PV+++ LV+ ++ GLN  +D +  +I+   P P F +
Sbjct: 129 M-RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDD 187

Query: 139 AXSKLILEE 147
           A + L  EE
Sbjct: 188 AATMLQEEE 196