Jatropha Genome Database

JcCA0307631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.20 - phase: 0 
         (83 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46030.1 | Symbols:  | unknown protein | chr5:18670531-186711...    94   2e-20

>AT5G46030.1 | Symbols:  | unknown protein |
          chr5:18670531-18671138 FORWARD
          Length = 120

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 57/83 (68%)

Query: 1  MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKI 60
          M +RK++       R++KL+T F+CPFCNH  SV C+ID K   G+A C +C+ ++ T I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 NPLTEPIDIYSEWIDECVGVNTA 83
            LTE IDIYSEWIDEC  VNTA
Sbjct: 61 TALTEAIDIYSEWIDECERVNTA 83