Jatropha Genome Database

JcCA0307531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307531.10 + phase: 0 /partial
         (336 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34750.1 | Symbols:  | RNA polymerase I specific transcriptio...   278   4e-75
AT1G30590.1 | Symbols:  | RNA polymerase I specific transcriptio...   220   8e-58
AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/...   187   6e-48

>AT2G34750.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr2:14660449-14663792 REVERSE
          Length = 613

 Score =  278 bits (711), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 221/331 (66%), Gaps = 15/331 (4%)

Query: 10  NEMEDLNFSDSDLVYHVRDALISAKTGDNESYHQLVGVMHHSKRLSSDE--VALLVTSLK 67
           N +++++ SD+ LV  VR AL S KTGD++ Y ++VGVM    +   D   VA L T LK
Sbjct: 18  NYVDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLK 77

Query: 68  ALSGAVSCIDNIYHESLLSSIFGMSMWNYGPDVMDALLELVISLAASNVKYVDACLEMLV 127
           ALSGAV+CID ++H+ LLS++F M +W++ PDVMDAL+ LVISLA ++ KY+D+CL MLV
Sbjct: 78  ALSGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLV 137

Query: 128 GNFVPPMYLVDVLKQPRGHGKKDQVLSRVHTALQDIAALVPMAALRLSNVVVHRMPTTYK 187
            NFVPP ++V+ L   R   KK  VLSRVH AL  I+ LVP+   RL  ++  +MP  +K
Sbjct: 138 SNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHK 197

Query: 188 KDLETDRLKYRTEIYVENMLRLESGAIREFVGNRMIMAVVDMLVELDVAIGWDDILRDDS 247
           KD       +   IYVE++L+LE+ +I +  G+ ++  V++ L +LD+ I WDDI +DDS
Sbjct: 198 KD-------HSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDS 250

Query: 248 SKGIFAIELEEGDIGS--DDEENDIGEFPRTSTHKSLGKNVVADLLDGLMVQTFEHLELC 305
           S+G+F +ELE+   G+  D +E  +G   + ++  S    +V+ LLD LMV  FEHLE C
Sbjct: 251 SRGMFDMELEDAAEGTMNDGDELPVGPLKQDTSDGS----IVSKLLDKLMVVAFEHLESC 306

Query: 306 ANNKRLSEVFETLLDSFMITILNTYKSKFSQ 336
            N+ RL +VFE+L  SF   ILNTYKSKF+Q
Sbjct: 307 QNDGRLDQVFESLFKSFENFILNTYKSKFTQ 337


>AT1G30590.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr1:10835976-10839524 REVERSE
          Length = 604

 Score =  220 bits (561), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/330 (43%), Positives = 202/330 (61%), Gaps = 22/330 (6%)

Query: 10  NEMEDLNFSDSDLVYHVRDALISAKTGDNESYHQLVGVMHHSKRLSSDEVALLVTSLKAL 69
           N M++  ++D+DLV+ VR AL S + GD + Y QL  VM  ++    D VA L T LK+L
Sbjct: 14  NAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADFDAVAQLETVLKSL 73

Query: 70  SGAVSCIDNIYHESLLSSIFGMSMW--NYGPDVMDALLELVISLAASNVKYVDACLEMLV 127
           S +V+ ID ++H+ LL +   MS+W  ++ P VMDAL++L+ISLAA++ KY+D CL MLV
Sbjct: 74  SVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAATSGKYLDPCLNMLV 130

Query: 128 GNFVPPMYLVDVLKQPRGHGKKDQVLSRVHTALQDIAALVPMAALRLSNVVVHRMPTTYK 187
            NF  P +   V  Q +   K  +V  RVH AL  I+ L+P+A   L +++   M    K
Sbjct: 131 RNFSQPTFKHKV-SQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNLVSILAQNMRKIDK 189

Query: 188 KDLETDRLKYRTEIYVENMLRLESGAIREFVGNRMIMAVVDMLVELDVAIGWDDILRDDS 247
           KD            YV+N+LRLE+ +I E VG+ ++M V++ +++LD+  G DD     S
Sbjct: 190 KDPSI-------VTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSGCDD-----S 237

Query: 248 SKGIFAIELEEGDIGSDDEENDIGEFPRTSTHKSL-GKNVVADLLDGLMVQTFEHLELCA 306
           + G+F +ELE+  + S   E D  EFP  +  ++  G NVV++LLD LMV  F HLE C 
Sbjct: 238 NGGMFDMELEDA-VESTMNEGD--EFPVGALKQNTSGGNVVSELLDKLMVLFFHHLESCQ 294

Query: 307 NNKRLSEVFETLLDSFMITILNTYKSKFSQ 336
           N+ RL EVFE L  SF   ILNTYK+KFSQ
Sbjct: 295 NSDRLDEVFEILFKSFENYILNTYKTKFSQ 324


>AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/
           binding | chr2:16384786-16387827 REVERSE
          Length = 573

 Score =  187 bits (476), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 193/351 (54%), Gaps = 57/351 (16%)

Query: 1   MGVELTQQFNEMEDLNFSDSDLVYHVRDALISAKTGDNESYHQLVGVMHHSKRLSSDE-- 58
           MG E      E+E  + SD  LV  +R+ L SA++GD + Y++LV +M+  K+ S D+  
Sbjct: 1   MGAE------EVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAM 54

Query: 59  -----------VALLVTSLKALSGAVSCIDNIYHESLLSSIFGMSMWNYGPDVMDALLEL 107
                      VA   T LK LS +V+C+D+++H  LL  I G  +W++ P+V+ ALL+L
Sbjct: 55  AQPEVPDDVDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDL 114

Query: 108 VISLAASNVKYVDACLEMLVGNFVPPMYLVDVLKQPRG-HGKKDQVLSRVHTALQDIAAL 166
           +ISLA ++ K++ +CL+ LV N         +  QPR    K  +VLSRVH AL  I+ L
Sbjct: 115 IISLATTSGKHLSSCLDTLVSN---------LRSQPRKLDNKMLEVLSRVHAALHKISYL 165

Query: 167 VPMAALRLSNVVVHRMPTTYKKDLETDRLKYRTEIYVENMLRLE-SGAIREFVGNRMIMA 225
           VP+A   L  ++   MP+ + K     RL+     YV+N+L+LE S  I + VG  ++M 
Sbjct: 166 VPLAPSILLPILAQSMPSVHDK----ARLQVVVP-YVKNLLKLENSSIIGKVVGKDILMM 220

Query: 226 VVDMLVELDVAIGWDDILRDDSSKGIFAIELEEGDIGSDDEENDIGEFPRTSTHKSLGKN 285
           V+    +LD  I  DD L++DSS  +F +EL+    G+                      
Sbjct: 221 VMGRFRDLDSEIECDDNLQNDSSLAMFDMELDVAVEGT---------------------- 258

Query: 286 VVADLLDGLMVQTFEHLELCANNKRLSEVFETLLDSFMITILNTYKSKFSQ 336
           +V+ LLD LMV++F HL+ C +  RL EVFE L +SF   ILNT K KFSQ
Sbjct: 259 LVSKLLDDLMVESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQ 309