Jatropha Genome Database

JcCA0307051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307051.30 - phase: 0 
         (243 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59240.1 | Symbols:  | 40S ribosomal protein S8 (RPS8B) | chr...   284   4e-77
AT5G20290.1 | Symbols:  | 40S ribosomal protein S8 (RPS8A) | chr...   272   1e-73

>AT5G59240.1 | Symbols:  | 40S ribosomal protein S8 (RPS8B) |
           chr5:23902626-23903670 REVERSE
          Length = 210

 Score =  284 bits (726), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/189 (75%), Positives = 150/189 (79%), Gaps = 13/189 (6%)

Query: 43  WWQKEGLEKEEKPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 102
           W +K   E   +PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRIL
Sbjct: 21  WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRIL 80

Query: 103 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXX 162
           DV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                
Sbjct: 81  DVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR-------------KKK 127

Query: 163 XXXXXXXXXKKSNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYIL 222
                    KKSNHVQRKLE RQ+ R LD H+EEQF +GRLLACI+SRPGQCGRADGYIL
Sbjct: 128 GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYIL 187

Query: 223 EGKELEFYM 231
           EGKELEFYM
Sbjct: 188 EGKELEFYM 196


>AT5G20290.1 | Symbols:  | 40S ribosomal protein S8 (RPS8A) |
           chr5:6851695-6853012 REVERSE
          Length = 222

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/183 (73%), Positives = 145/183 (79%), Gaps = 1/183 (0%)

Query: 50  EKEEKPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS 109
           E   +PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNAS
Sbjct: 28  EMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNAS 87

Query: 110 NNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXX-XXXXXXXXXXXX 168
           NNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                       
Sbjct: 88  NNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAP 147

Query: 169 XXXKKSNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELE 228
              KKSNH+ RK+  RQ+ R LD HIE+QF +GRLLACISSRPGQCGRADGYILEGKELE
Sbjct: 148 EEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELE 207

Query: 229 FYM 231
           FYM
Sbjct: 208 FYM 210