Jatropha Genome Database

JcCA0306971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.20 + phase: 0 /partial
         (217 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08280.1 | Symbols: HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE...   265   2e-71

>AT5G08280.1 | Symbols: HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE);
           hydroxymethylbilane synthase | chr5:2663763-2665596
           REVERSE
          Length = 382

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/216 (66%), Positives = 162/216 (75%), Gaps = 5/216 (2%)

Query: 3   ALSSLYTSQGLMMSR-PSSPVIFRASGSVSVIGFSLPCFQTRVFPNCIKKRSFS-VPRAS 60
           A SSL  +  ++++R PSS V   + GSVS IGFSLP   +     C +K+S S   +A 
Sbjct: 4   ASSSLSQAHKVVLTRQPSSRVNTCSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKAC 63

Query: 61  VAVEQQTQESKLALIRIGTRGSPLALAQAYETRDKLMATHSELAEEGAIQIVIIKTTGDK 120
           VAVEQ+T   + A+IRIGTRGSPLALAQAYETR+KL   H EL E+GAI I IIKTTGDK
Sbjct: 64  VAVEQKT---RTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDK 120

Query: 121 ILSQPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNLEREDVRDA 180
           ILSQPLADIGGKGLFTKEIDEALING IDIAVHSMKDVPTYLPEKTILPCNL REDVRDA
Sbjct: 121 ILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDA 180

Query: 181 FIXXXXXXXXXXXXXXVIGTASLRRKSQILHRYASL 216
           FI              V+GTASLRRKSQILH+Y +L
Sbjct: 181 FICLTAATLAELPAGSVVGTASLRRKSQILHKYPAL 216