Jatropha Genome Database
- JcCA0306971.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0306971.10 - phase: 0
(102 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | SUMO2 (SMA... 177 1e-45
AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | SUMO2 (SMA... 167 1e-42
AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | SUMO1 (SMA... 166 3e-42
AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | SUMO3 (SMA... 102 4e-23
AT5G55856.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 95 9e-21
AT5G48710.1 | Symbols: | ubiquitin-related | chr5:19755065-1975... 83 4e-17
AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | SUMO5 (SMALL UBIQU... 75 6e-15
AT5G48700.1 | Symbols: | ubiquitin-related | chr5:19749494-1975... 74 2e-14
AT1G68185.1 | Symbols: | ubiquitin-related | chr1:25556542-2555... 49 5e-07
AT5G55855.1 | Symbols: | unknown protein | chr5:22606254-226064... 46 4e-06
>AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | SUMO2
(SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding /
protein tag | chr5:22383747-22384772 REVERSE
Length = 103
Score = 177 bits (448), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 88/93 (94%), Gaps = 1/93 (1%)
Query: 6 IGQTPEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAF 65
+ TPEEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+FNSIAF
Sbjct: 1 MSATPEEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAF 59
Query: 66 LFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 98
LFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 60 LFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 92
>AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | SUMO2 (SMALL
UBIQUITIN-LIKE MODIFIER 2); protein binding / protein
tag | chr5:22383747-22384772 REVERSE
Length = 116
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 88/106 (83%), Gaps = 14/106 (13%)
Query: 6 IGQTPEEDKKPNDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAY 52
+ TPEEDKKP DQ AHINLKVKGQ DGNEVFFRIKRSTQLKKLMNAY
Sbjct: 1 MSATPEEDKKP-DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNAY 59
Query: 53 CDRQSVEFNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 98
CDRQSV+FNSIAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 60 CDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 105
>AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | SUMO1
(SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding /
protein tag | chr4:13497466-13498458 FORWARD
Length = 100
Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 11 EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGR 70
EEDKKP D AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ NSIAFLFDGR
Sbjct: 6 EEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGR 65
Query: 71 RLRGEQTPDELEMEDGDEIDAMLHQT 96
RLR EQTPDEL+MEDGDEIDAMLHQT
Sbjct: 66 RLRAEQTPDELDMEDGDEIDAMLHQT 91
>AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | SUMO3 (SMALL
UBIQUITIN-LIKE MODIFIER 3); protein binding / protein
tag | chr5:22385468-22386071 REVERSE
Length = 111
Score = 102 bits (254), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Query: 12 EDKKPNDQS--AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDG 69
+D KP DQ AH+ LKVK QDG+EV F+ K+S LKKLM YCDR+ ++ ++ AF+F+G
Sbjct: 5 QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64
Query: 70 RRLRGEQTPDELEMEDGDEIDAMLHQTGGLLWN 102
R+ G +TPDEL+MEDGD IDA +GGL N
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGGLRAN 97
>AT5G55856.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: protein modification process; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Ubiquitin (InterPro:IPR000626); BEST Arabidopsis
thaliana protein match is: SUMO1 (SMALL UBIQUITIN-LIKE
MODIFIER 1); protein binding / protein tag
(TAIR:AT4G26840.1); Has 781 Blast hits to 780 proteins
in 173 species: Archae - 0; Bacteria - 0; Metazoa - 477;
Fungi - 93; Plants - 124; Viruses - 1; Other Eukaryotes
- 86 (source: NCBI BLink). | chr5:22607927-22608640
FORWARD
Length = 97
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 13 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRL 72
DKKP S+HI +KVK QD V+FRIKR +L+K+M+AY D+ VE +++ FLFDG R+
Sbjct: 5 DKKPLIPSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRI 64
Query: 73 RGEQTPDELEMEDGDEIDAMLHQTGGLLW 101
+ QTP+EL +ED DEI+A Q GG +
Sbjct: 65 KLNQTPNELGLEDEDEIEAFGEQLGGFSF 93
>AT5G48710.1 | Symbols: | ubiquitin-related |
chr5:19755065-19755572 REVERSE
Length = 114
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 12 EDKKPNDQSAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGR 70
+ +K H+ LKVKGQD + F ++R+ +L K+M Y + +E+N+ FLFDG
Sbjct: 17 QKRKVVSDPTHVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRFLFDGS 76
Query: 71 RLRGEQTPDELEMEDGDEIDAMLHQTGGL 99
R+R TPDELE +DGDEIDAML Q G
Sbjct: 77 RIREYHTPDELERKDGDEIDAMLCQQSGF 105
>AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | SUMO5 (SMALL
UBIQUITINRELATED MODIFIER 5); protein tag |
chr2:13894968-13895399 FORWARD
Length = 108
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 23 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELE 82
+ LKVK Q G E ++I LKKLM+AYC +++++++S+ F+++GR ++ QTP +L
Sbjct: 28 VTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSVRFVYNGREIKARQTPAQLH 87
Query: 83 MEDGDEIDAMLHQTGG 98
ME+ DEI ++ GG
Sbjct: 88 MEEEDEICMVMELGGG 103
>AT5G48700.1 | Symbols: | ubiquitin-related |
chr5:19749494-19750013 REVERSE
Length = 117
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 11 EEDKKPNDQSAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFD- 68
E+ K +S H+ L VKGQD V FR++R +L KLM Y + +E+N+ FL D
Sbjct: 19 EKRKDVESESTHVTLNVKGQDEEGVKVFRVRRKARLLKLMEYYAKMRGIEWNTFRFLSDD 78
Query: 69 GRRLRGEQTPDELEMEDGDEIDAMLHQTGGL 99
G R+R T D++E++DGD+IDA+L Q G
Sbjct: 79 GSRIREYHTADDMELKDGDQIDALLPQESGF 109
>AT1G68185.1 | Symbols: | ubiquitin-related |
chr1:25556542-25558173 FORWARD
Length = 215
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 2 SSGVIGQTPEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 61
SS Q P E P + A I + ++ +DG + R+ + ++++ Y D+ ++
Sbjct: 125 SSETAAQLPSE---PTNDRAKIVITIQDKDGQKTL-RVFADEKFERVIKLYTDKAKLDPQ 180
Query: 62 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 96
++ F+FDG ++ TP EL MED D I+ +T
Sbjct: 181 NLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215
>AT5G55855.1 | Symbols: | unknown protein |
chr5:22606254-22606491 FORWARD
Length = 59
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 48 LMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDE---LEMEDGDEIDAMLHQTGGL 99
+M AY D+ + ++ F DG R++ QTP+E L++EDGDEIDA + Q G
Sbjct: 1 MMQAYSDKVGQQMSAFRFHCDGIRIKPNQTPNEELQLDLEDGDEIDAFVDQIAGF 55