Jatropha Genome Database

JcCA0306761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306761.10 - phase: 2 /TE/partial
         (374 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1...   574   e-164
AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' ex...   521   e-148
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBON...   475   e-134

>AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease |
           chr1:28408289-28414825 FORWARD
          Length = 1020

 Score =  574 bits (1479), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 306/369 (82%), Gaps = 2/369 (0%)

Query: 5   QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
           +PSPT+F+EVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQ             
Sbjct: 68  RPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASD 127

Query: 65  XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
                          GR+LPPK +SQ FDSNVITPGTEFM VLSIALQYY+HLRLN+D G
Sbjct: 128 AAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDVG 187

Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
           WK IKVILSDANVPGEGEHKIMSYIRLQRNLPG++PNTRHCLYGLDADLIML LATHEVH
Sbjct: 188 WKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVH 247

Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
           FSILREVV+TPGQQ++CFLCGQMGH A+ CEGK K++AGE DEKG     VKKPYQFL+I
Sbjct: 248 FSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQFLHI 307

Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
           W LREYLE EMRIPNPPF+ID ER+VDDFIF+CFFVGNDFLPHMPTLEIREGAINLL+AV
Sbjct: 308 WVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAV 367

Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKA--Q 362
           YKKEF +  GYLTD  KPNL  VE FIQAVGS+EDKIFQKRA  HQRQ+ER+KR+KA   
Sbjct: 368 YKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVKRDKAGKA 427

Query: 363 ARRGDDAEP 371
            +R DD  P
Sbjct: 428 TKRMDDEAP 436


>AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3'
           exonuclease/ 5'-3' exoribonuclease/ nucleic acid binding
           | chr5:17007513-17014534 FORWARD
          Length = 1012

 Score =  521 bits (1341), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/365 (68%), Positives = 288/365 (78%), Gaps = 2/365 (0%)

Query: 5   QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
           +PSPT+F EVFQCMFDYIDRLFVMVRPRKLL+MAIDGVAPRAKMNQQ             
Sbjct: 70  KPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAAE 129

Query: 65  XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
                          G+KLPPK +SQ FDSNVITPGTEFMA LS AL+YYIH+RLN DPG
Sbjct: 130 AAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLNSDPG 189

Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
           WK IKVILSDANVPGEGEHKIMSYIR  +N PGYNPNT HCLYGLDADLIML+LATHE+H
Sbjct: 190 WKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIH 249

Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
           FSILREVVF PG++ KCFLCGQ GH AA CEGK KRK GE  +     V VKKPY+F+NI
Sbjct: 250 FSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVVKKPYEFVNI 309

Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
           W LREYLE +M+IP    ++D  R++DDFIF+CFFVGNDFLPHMPTLEIREGAI LL++V
Sbjct: 310 WILREYLEHDMQIPGAKKNLD--RLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSV 367

Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
           YK +F +   YLTD+SK NL NVE FI+AVG YE++IFQKRA++ QRQSER +R+KA+ +
Sbjct: 368 YKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQRQSERFRRDKARDK 427

Query: 365 RGDDA 369
             D+A
Sbjct: 428 ARDNA 432


>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4
           (EXORIBONUCLEASE 4); 5'-3' exonuclease/ 5'-3'
           exoribonuclease/ nucleic acid binding |
           chr1:20350300-20356650 FORWARD
          Length = 947

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/366 (62%), Positives = 277/366 (75%), Gaps = 7/366 (1%)

Query: 5   QPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQXXXXXXXXXXXXX 64
           +P+P ++D+VF+ MF+YID LF +VRPRK+LY+AIDGVAPRAKMNQQ             
Sbjct: 69  KPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFRAAKDAAE 128

Query: 65  XXXXXXXXXXXXXXXGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPG 124
                          G+ L  KE+++T DSNVITPGT FMA+LS+ALQYYI  RLN++PG
Sbjct: 129 AEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPG 188

Query: 125 WKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLALATHEVH 184
           W+ +KVILSD+NVPGEGEHKIMSYIRLQRNLPG++PNTRHCLYGLDADLIML+LATHEVH
Sbjct: 189 WRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVH 248

Query: 185 FSILREVVFTPGQQDKCFLCGQMGHLAAGCEGKAKRKAGEFDEKGGEAVAVKKPYQFLNI 244
           FSILREV+  PGQQ+KCF+CGQ GH A+ C GK+       +    +    KK YQFLNI
Sbjct: 249 FSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGS-----NNAAADIPIHKKKYQFLNI 303

Query: 245 WTLREYLEFEMRIPNPPFDIDFERVVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAV 304
           W LREYL++E+ IP+PPF I+FER++DDF+F+CFFVGNDFLPHMPTLEIREGAINLL+ V
Sbjct: 304 WVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHV 363

Query: 305 YKKEFSTMGGYLTDASKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQSERIKREKAQAR 364
           Y+KEF+ MGGYLTD+ +  L  VEHFIQAV   EDKIFQKR R+  +QS     E  Q  
Sbjct: 364 YRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRI--KQSMDNNEEMKQRS 421

Query: 365 RGDDAE 370
           R D +E
Sbjct: 422 RRDPSE 427