Jatropha Genome Database

JcCA0306451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.20 - phase: 0 
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA bind...   154   8e-39
AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA bind...   152   3e-38

>AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA binding
           / DNA-directed RNA polymerase/ nucleic acid binding /
           transcription regulator/ zinc ion binding |
           chr3:5794526-5795699 FORWARD
          Length = 114

 Score =  154 bits (390), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 75/80 (93%)

Query: 36  QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
           QE ADN+CVYRNEVHHSV+ERTQ+L DVA+DPTLPRTKAV C  C+H+EAVFFQATARGE
Sbjct: 35  QEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKAVRCSKCQHREAVFFQATARGE 94

Query: 96  EGMTLFFVCCNPNCGHRWRE 115
           EGMTLFFVCCNPNCGHRWRE
Sbjct: 95  EGMTLFFVCCNPNCGHRWRE 114


>AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA binding
           / DNA-directed RNA polymerase/ nucleic acid binding /
           transcription regulator/ zinc ion binding |
           chr4:9202529-9203975 REVERSE
          Length = 114

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 74/80 (92%)

Query: 36  QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
           QEAADNNCVYRNEVHHSV+E+TQ+L DVA+DPTLPRTKAV C  C+H EAVFFQATARGE
Sbjct: 35  QEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARGE 94

Query: 96  EGMTLFFVCCNPNCGHRWRE 115
           EGMTLFFVCCNPNC HRWRE
Sbjct: 95  EGMTLFFVCCNPNCSHRWRE 114