Jatropha Genome Database

JcCA0306451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.10 + phase: 0 /pseudo/partial
         (1182 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49430.1 | Symbols:  | transducin family protein / WD-40 repe...   849   0.0  
AT2G47410.1 | Symbols:  | nucleotide binding | chr2:19449133-194...   341   2e-93

>AT5G49430.1 | Symbols:  | transducin family protein / WD-40 repeat
            family protein | chr5:20037338-20045454 REVERSE
          Length = 1677

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1109 (47%), Positives = 692/1109 (62%), Gaps = 95/1109 (8%)

Query: 96   DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPYR 155
            DGTSIILSDDVGQLYIL+TGQG+SQ+DAKYDQFFLGDYRPL+QDTYGN++DQE+QL PYR
Sbjct: 640  DGTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYR 699

Query: 156  RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPLA 215
            RNM+D LCDSGM PY EPYQ+ +QKRRLGAL  EW+P S+KL V PD +LD D+QM PLA
Sbjct: 700  RNMEDPLCDSGMIPYEEPYQTTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLA 759

Query: 216  DLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSVDRECSA 275
            DLD L EPLPEF+D M+WEPE ++ S+++DSEYNVPEEYS+G EQ  LNSS+S +   S+
Sbjct: 760  DLD-LAEPLPEFIDVMEWEPEVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSS 818

Query: 276  EDSEVEG--RNGFHRSKRKKSKAEIEIMTSSGRRVKRRNLDECDGNTLRTNRTRKSRIGC 333
             +S  +   +N   RSKRKK K E  IMTSSGRRVK+RN DE +G      RTRKSR G 
Sbjct: 819  GESYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGR 878

Query: 334  KASKRKSSTSKGFRPQRAAARNALTLFSKITGAATDGXXXXXXXXXXXXXXX-XLQNSDI 392
            K SKRKSS SK  RP+RAAARNAL+ FSKITG + D                   Q+S  
Sbjct: 879  KESKRKSSKSKSSRPRRAAARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGT 938

Query: 393  QSDESEKSLQNERNKHLKGKEVPLEDNEDFVKSHEQSHLNAGNRGKLVLKLPVRNSNKFV 452
               E E +L N   K  KGK + + D++D  +  +    +   R +LVL+ PVRNS+K  
Sbjct: 939  GDSELEVALLNGHGKQSKGKTILVCDSDDGAQQCDIRETHTAERRRLVLRFPVRNSDKLT 998

Query: 453  VSETKTTNHQIDVGPSSCKAPTEASNVNRVHIRSVDLERSSSYTNGTAVKAKERGQTDSY 512
            + E        ++  SSC  P                  S +  NG    ++  G     
Sbjct: 999  LLE--------NLPGSSCDVP------------------SPTLGNGCTEDSRIPGN---- 1028

Query: 513  MSEGYRNEDIKWGGVKARTSKRQRFGEAMSSAAYARFGLCFSDRRERESNLNGHVKSQ-N 571
              EG     +KWG VKART+KR R GEA+SS       L  SD   +E+N+      + N
Sbjct: 1029 QFEGLDVSKVKWGMVKARTTKRIR-GEAISSHE-----LMGSDPEGKENNVKEDSNHRGN 1082

Query: 572  TCGTSSSAEVQDYAADNTNEVGATGREDTAADTSDVV-NTMTNGKEHLNFNECMDSDELP 630
                 S  E++            T  +D A DT  V+ N + NG +   + E +D     
Sbjct: 1083 GVTAPSCLELK------------TDIDDMAVDTDTVISNGLPNGGKR--YPE-LDGSPSR 1127

Query: 631  MVGHTANGNDSSLEFKESNI----PISTKLRIKSRMISRES-----------SENQGNEG 675
            +    A+ +  ++  +   I    PIST L+I+S+ +SR             S +Q   G
Sbjct: 1128 VADDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGG 1187

Query: 676  SCILPASLAENTDTPVLEVPKNERTNRTTPVNEGDEFQEPNAQV-DKISMPLLNDTIGSN 734
            S  L     +      L+  K+        +   D   E N Q+ D +S  + ND   S+
Sbjct: 1188 SDALNDGFEDAKCDLTLDCQKDGVVGTEISL-RNDCVLELNPQICDALS--IANDVPVSH 1244

Query: 735  THPKKMFNVVYRRSKLSKDRANSEGDSGTREGVSHASADEQY-TGCILHEDITDGPHRTD 793
            +HPK+MF+ VYRR K  K + N + D+   + VS  S  + + +G   HE  ++G H T+
Sbjct: 1245 SHPKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGASNGFHGTE 1303

Query: 794  ITGSKATTDDLMNCNIKLGQEHDSDDVCRNADNGSISSRCQLPSEEWGSSSRMTVGLRSS 853
            + G + +   L          H  D +  +  N       Q   EE  S+S  T+ LRS+
Sbjct: 1304 LNGLEKSEGSLT---------HIQDKISDSRGN-------QNSQEELRSASGATLRLRST 1347

Query: 854  RNRRTSYHFRDASPVDRRKANQSGKKVSWLMLSKHEEGSRYIPQQGDEVVYFRQGHQEYI 913
            RNR+++Y F +  P++ +K  Q  + VSWL LS HEEGSRYIPQ GDEV Y RQGHQEY+
Sbjct: 1348 RNRKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYL 1407

Query: 914  DYIGSRETGPWKSVKG-HIRAVEFCKLEALEYSTLPGSGDSCCKMTLKFVDSTSDVCQKS 972
            ++   RE  PW S+KG +I+AVE CK+E+LEY+TLPGSGDSCCKM LK +D  S+V  K+
Sbjct: 1408 NFSSLREVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDPNSEVFNKA 1467

Query: 973  FKLTLPEVTGFPDFLVERTRFDAAMRRNWTCRDKCRVYWKNDGEGDGSWWEGRILSVKAK 1032
            FKLTLPEV  FPDFLVER+R++AA++RNWTCRDKC+V+W+++GE DGSWWEGRIL+VK K
Sbjct: 1468 FKLTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPK 1527

Query: 1033 TSEFPDSPWERYTIQYRSDPRETHQHSPWELFDFDSQWEQPHIDDEIRNKLISAFAKLEQ 1092
            + +FPDSPWERYT++Y+SDP ETH HSPWELFD D++WEQPHIDDE RN+L+SA  KLE 
Sbjct: 1528 SPDFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLET 1587

Query: 1093 SGNTEQDRYGIQKLRQVSQKTNFTNRYPVPLSLEVIQSRLENYYYRTLEAVKHDIEVMLT 1152
            S    QD +G++KL Q    ++++NR+PVPLSLEVI+SRLEN YYR++EA++HD+ VML+
Sbjct: 1588 SDKRTQDSFGLRKLNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALRHDVSVMLS 1647

Query: 1153 NSESYFIKNLELSGKMKRLSGWFKKTLSS 1181
            N+E++F +N  ++ K+  LS WF +TL S
Sbjct: 1648 NAETFFGRNKSVAAKISNLSNWFDRTLPS 1676


>AT2G47410.1 | Symbols:  | nucleotide binding | chr2:19449133-19456991
            FORWARD
          Length = 1520

 Score =  341 bits (875), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/347 (48%), Positives = 235/347 (67%), Gaps = 12/347 (3%)

Query: 838  EEWGSSSRMTVGLRSSRNRRTSYHFRDASPVDRRKANQSGKKVSWLMLSKHEEGSRYIPQ 897
            EEW S+S+     RS+   + S H          + N    K+SWL+LS+HEEG RYIPQ
Sbjct: 1183 EEWPSTSKAGSRSRSASVSKPSLH-------TGIRLNSVSGKISWLLLSEHEEGCRYIPQ 1235

Query: 898  QGDEVVYFRQGHQEYIDYIGSRETGPWKSVKGHIRAVEFCKLEALEYSTLPGSGDSCCKM 957
             GDEV+YF+QGHQE++      +    + +  ++ AVE CK+E L Y T PGSGDSCCKM
Sbjct: 1236 LGDEVIYFKQGHQEFLKTKELNDRDRSRYLPRNLGAVEICKVEKLNYDTYPGSGDSCCKM 1295

Query: 958  TLKFVDSTSD-VCQKSFKLTLPEVTGFPDFLVERTRFDAAMRRNWTCRDKCRVYWKN-DG 1015
            TL+ +DS+S    +K F+LTLPE+  FPDF+VE+TR+DAA++ NW   ++CRV+W++  G
Sbjct: 1296 TLRVLDSSSSHASRKEFQLTLPELINFPDFIVEKTRYDAAIQTNWKIGNECRVWWRDATG 1355

Query: 1016 EGDGSWWEGRILSVKAKTSEFPDSPWERYTIQYRSDPRETHQHSPWELFDFDSQWEQPHI 1075
            EG G+WWEGRI S + K+++FP+SPWERY + Y +   ET  HSPWE  + +  WE+  I
Sbjct: 1356 EG-GAWWEGRIESSQVKSTDFPESPWERYRVVYETG--ETSLHSPWEFDNPEFPWEKSTI 1412

Query: 1076 DDEIRNKLISAFAKLEQSGNTEQDRYGIQKLRQVSQKTNFTNRYPVPLSLEVIQSRLENY 1135
            +DE R KL+S FA L +S +  QD YGIQKL + +QK +F NR+PVPL  E+I  RLEN 
Sbjct: 1413 EDERREKLLSLFAGLVKSISKHQDSYGIQKLNEAAQKMDFCNRFPVPLYPELIHERLENQ 1472

Query: 1136 YYRTLEAVKHDIEVMLTNSESYFIKNLELSGKMKRLSGWFKKTLSSL 1182
            YYR++E+ KHD++ ML+N+E YF+++  +  K+KRL     KTL  L
Sbjct: 1473 YYRSIESFKHDVDAMLSNAELYFVRSAHMLSKIKRLRDKLTKTLRKL 1519



 Score =  335 bits (859), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/277 (61%), Positives = 217/277 (78%), Gaps = 6/277 (2%)

Query: 95  RDGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPY 154
           +DGTSI+LSDDVGQ+Y LNTGQGESQ++AKYDQFFLGDYRPL++DT G+++DQETQL+P+
Sbjct: 623 QDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDYRPLIRDTNGHVLDQETQLLPH 682

Query: 155 RRNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPL 214
           RRN+QDLLCDS M PYPEP Q+M+Q+RRLGAL +EW+P SIK +V PDFSL  D+ M PL
Sbjct: 683 RRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPSSIKFSVGPDFSLGQDYIMPPL 742

Query: 215 ADLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSVDRECS 274
           ADLD L+EPLPEF+DAM WEPE+EV S+D+DSEYN   E S+ G + S  S+SS + ECS
Sbjct: 743 ADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYNA--EVSSDGARASPCSNSSNELECS 800

Query: 275 AEDSEVEG--RNGFHRSKRKKSKAEIEIMTSSGRRVKRRNLDECDGNTLRTNRTRKSRIG 332
           +EDS+VE    + +H  KR++   ++ + TSSGRR K R LDE D +     RT+  RI 
Sbjct: 801 SEDSDVENIHESSYHW-KRRRKHPKVNVSTSSGRRDK-RILDENDSSNSGIKRTKNRRIV 858

Query: 333 CKASKRKSSTSKGFRPQRAAARNALTLFSKITGAATD 369
            KASKRK S  K  RPQRAAA+NA +L SKI+G+++D
Sbjct: 859 VKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSSD 895