Jatropha Genome Database

JcCA0306361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306361.10 - phase: 0 
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18335.1 | Symbols:  | unknown protein | chr4:10128869-101293...    61   1e-10

>AT4G18335.1 | Symbols:  | unknown protein | chr4:10128869-10129363
           FORWARD
          Length = 164

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 89  KTRAFSVMLPKGFVPPSGSSPCHNEKPTSRLTFHCDLSS 127
           +   FSVMLPKGFVPPSGSSPCHN+ P S  T  CDLS+
Sbjct: 124 RQDTFSVMLPKGFVPPSGSSPCHNQNPNSATTLFCDLST 162