Jatropha Genome Database

JcCA0305691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305691.10 + phase: 0 /partial
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22320.1 | Symbols:  | leucine-rich repeat family protein | c...    50   1e-06

>AT5G22320.1 | Symbols:  | leucine-rich repeat family protein |
           chr5:7388175-7390426 REVERSE
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 11/100 (11%)

Query: 124 QRKSKKSTEKLDELDAIDNGETSFADFFSV-NYVESSKHSVEKKLIDKAGENINSTGGLV 182
           ++K K++T K +ELDAID+ ETSFA+ FS  N  + S+  +EKK       ++  TG + 
Sbjct: 358 EKKQKRATPK-EELDAIDDAETSFAEIFSRENVPKGSEDGIEKK----KKSSVQETGLVK 412

Query: 183 TLSAKKKKTKNRVANH-----AVQLPAEVEVGMGGPSTWD 217
            +  K  K K +          + LP EVE+G+GG S W+
Sbjct: 413 VIDTKANKKKKKSEKKQSKSVVIDLPMEVEIGLGGESKWE 452