Jatropha Genome Database
- JcCA0305451.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0305451.10 - phase: 0 /pseudo/partial
(664 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14120.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 578 e-165
AT3G14120.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 578 e-165
>AT3G14120.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: transport; LOCATED IN: nuclear pore;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
Other Eukaryotes - 5 (source: NCBI BLink). |
chr3:4677993-4685455 FORWARD
Length = 1077
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/350 (76%), Positives = 301/350 (86%), Gaps = 3/350 (0%)
Query: 1 VRGSHVGTYLPNSGIWHHTQRLLKKGASNTNTVHHLDFDAPTREHAHQLPDDKKQDESLL 60
V+GSHVGTYLPN+G+WHHTQR LKK SN +T+HHLDFDAPTREHA LPDD KQDES+L
Sbjct: 261 VQGSHVGTYLPNAGVWHHTQRYLKKNGSNADTLHHLDFDAPTREHARLLPDDYKQDESVL 320
Query: 61 EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDLAPSIEALVKNGKNRTLQAIEL 120
EDVWTL+RAGR+EEACDLCRSAGQ WRAATLCPF G+D+ PSIEALVKNG+NRTLQAIE
Sbjct: 321 EDVWTLIRAGRIEEACDLCRSAGQSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQ 380
Query: 121 ESGIGQQWRLWKWASFCASEKIAEQNGGKYEVAVYASQCSDLKRMLPICTDWESACWAMA 180
ESG G Q RLWKWAS+CASEKIAEQ+GGK+EVAV+A+QCS+L RMLPICTDWESACWAMA
Sbjct: 381 ESGFGNQLRLWKWASYCASEKIAEQDGGKHEVAVFATQCSNLNRMLPICTDWESACWAMA 440
Query: 181 KSWLDVQVDLELARSQPGRIEQLKSYGDDIDGSPGQIDSASHPSIGPEGWPLHVLNQQPR 240
KSWLDVQVDLELA+S+PG E+ KS ID SP + S GPE WPLHVLNQQPR
Sbjct: 441 KSWLDVQVDLELAQSKPGLTERFKSC---IDESPEATQNGCQASFGPEDWPLHVLNQQPR 497
Query: 241 DFSALLQKLHSGETINEAVARGCKEQQRQIEMDLMLGNIPHLLDMIWAWITPSEDDQNVF 300
D ALLQKLHSGE ++EAV RGCKEQ RQI+M+LMLG+I HLLD+IW+WI P EDDQ+ F
Sbjct: 498 DLPALLQKLHSGEMVHEAVVRGCKEQHRQIQMNLMLGDISHLLDIIWSWIAPLEDDQSNF 557
Query: 301 RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL 350
RPHGDP MI+FGAH+VLVLR L +E+ DSF+EKL NVGDLILHMY MFL
Sbjct: 558 RPHGDPHMIKFGAHMVLVLRLLFTDEINDSFKEKLNNVGDLILHMYAMFL 607
Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 180/245 (73%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Query: 420 STITNVKDVSVKLLLRALMHSNILFREFSLISMWRIPAMPIGAHTLLSLLAEPLKQLSEI 479
STI +VKDV+ KLLLR+LMHSNILFREF+LI+MWR+PA P+GAHTLLS LAEPLKQLSE
Sbjct: 719 STIKDVKDVTSKLLLRSLMHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSEN 778
Query: 480 PDTLEDYFSENLKEFQDWSEYYSCDATYRNWLKIELENAEVPPFELSMXXXXXXXXXXXX 539
PDTLEDY SENL+EFQDW+EYYSCDA YRNWLK +LENAEV ELS
Sbjct: 779 PDTLEDYVSENLQEFQDWNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKE 836
Query: 540 XLNSSLSLLLRKENPWLTPVEDQAYESAAPTFLELHATAMLCLPSGECMCPDATICTALM 599
L+SSLSLLLR++NPW+T +ED +ES FLELHATAMLCLPSGEC+ PDAT+C ALM
Sbjct: 837 TLDSSLSLLLRQDNPWMTFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALM 896
Query: 600 SALYSSVSEEIVLHRQLMVNVALSPRDNYCIEVVLRCLAVDGDGLGSHQANDGGILGTVM 659
SALYSSVSEE+VL RQLMVNV++S RD+YCIEVVLRCLA+ GDGLG H ANDGGIL V
Sbjct: 897 SALYSSVSEEVVLDRQLMVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVA 956
Query: 660 AAGFK 664
AAGFK
Sbjct: 957 AAGFK 961
>AT3G14120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: transport; LOCATED IN: nuclear pore;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
Other Eukaryotes - 5 (source: NCBI BLink). |
chr3:4677993-4685455 FORWARD
Length = 1101
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/350 (76%), Positives = 301/350 (86%), Gaps = 3/350 (0%)
Query: 1 VRGSHVGTYLPNSGIWHHTQRLLKKGASNTNTVHHLDFDAPTREHAHQLPDDKKQDESLL 60
V+GSHVGTYLPN+G+WHHTQR LKK SN +T+HHLDFDAPTREHA LPDD KQDES+L
Sbjct: 261 VQGSHVGTYLPNAGVWHHTQRYLKKNGSNADTLHHLDFDAPTREHARLLPDDYKQDESVL 320
Query: 61 EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDLAPSIEALVKNGKNRTLQAIEL 120
EDVWTL+RAGR+EEACDLCRSAGQ WRAATLCPF G+D+ PSIEALVKNG+NRTLQAIE
Sbjct: 321 EDVWTLIRAGRIEEACDLCRSAGQSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQ 380
Query: 121 ESGIGQQWRLWKWASFCASEKIAEQNGGKYEVAVYASQCSDLKRMLPICTDWESACWAMA 180
ESG G Q RLWKWAS+CASEKIAEQ+GGK+EVAV+A+QCS+L RMLPICTDWESACWAMA
Sbjct: 381 ESGFGNQLRLWKWASYCASEKIAEQDGGKHEVAVFATQCSNLNRMLPICTDWESACWAMA 440
Query: 181 KSWLDVQVDLELARSQPGRIEQLKSYGDDIDGSPGQIDSASHPSIGPEGWPLHVLNQQPR 240
KSWLDVQVDLELA+S+PG E+ KS ID SP + S GPE WPLHVLNQQPR
Sbjct: 441 KSWLDVQVDLELAQSKPGLTERFKSC---IDESPEATQNGCQASFGPEDWPLHVLNQQPR 497
Query: 241 DFSALLQKLHSGETINEAVARGCKEQQRQIEMDLMLGNIPHLLDMIWAWITPSEDDQNVF 300
D ALLQKLHSGE ++EAV RGCKEQ RQI+M+LMLG+I HLLD+IW+WI P EDDQ+ F
Sbjct: 498 DLPALLQKLHSGEMVHEAVVRGCKEQHRQIQMNLMLGDISHLLDIIWSWIAPLEDDQSNF 557
Query: 301 RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL 350
RPHGDP MI+FGAH+VLVLR L +E+ DSF+EKL NVGDLILHMY MFL
Sbjct: 558 RPHGDPHMIKFGAHMVLVLRLLFTDEINDSFKEKLNNVGDLILHMYAMFL 607
Score = 352 bits (902), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/245 (73%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Query: 420 STITNVKDVSVKLLLRALMHSNILFREFSLISMWRIPAMPIGAHTLLSLLAEPLKQLSEI 479
STI +VKDV+ KLLLR+LMHSNILFREF+LI+MWR+PA P+GAHTLLS LAEPLKQLSE
Sbjct: 719 STIKDVKDVTSKLLLRSLMHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSEN 778
Query: 480 PDTLEDYFSENLKEFQDWSEYYSCDATYRNWLKIELENAEVPPFELSMXXXXXXXXXXXX 539
PDTLEDY SENL+EFQDW+EYYSCDA YRNWLK +LENAEV ELS
Sbjct: 779 PDTLEDYVSENLQEFQDWNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKE 836
Query: 540 XLNSSLSLLLRKENPWLTPVEDQAYESAAPTFLELHATAMLCLPSGECMCPDATICTALM 599
L+SSLSLLLR++NPW+T +ED +ES FLELHATAMLCLPSGEC+ PDAT+C ALM
Sbjct: 837 TLDSSLSLLLRQDNPWMTFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALM 896
Query: 600 SALYSSVSEEIVLHRQLMVNVALSPRDNYCIEVVLRCLAVDGDGLGSHQANDGGILGTVM 659
SALYSSVSEE+VL RQLMVNV++S RD+YCIEVVLRCLA+ GDGLG H ANDGGIL V
Sbjct: 897 SALYSSVSEEVVLDRQLMVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVA 956
Query: 660 AAGFK 664
AAGFK
Sbjct: 957 AAGFK 961