Jatropha Genome Database

JcCA0304841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304841.10 + phase: 0 
         (407 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44250.1 | Symbols:  | unknown protein | chr5:17823876-178256...   464   e-131
AT2G15695.1 | Symbols:  | unknown protein | chr2:6834194-6836336...   400   e-112
AT5G44250.2 | Symbols:  | unknown protein | chr5:17823876-178251...   345   4e-95
AT3G19970.1 | Symbols:  | unknown protein | chr3:6959644-6961367...    52   7e-07

>AT5G44250.1 | Symbols:  | unknown protein | chr5:17823876-17825620
           REVERSE
          Length = 403

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/367 (62%), Positives = 278/367 (75%), Gaps = 6/367 (1%)

Query: 19  GIAVLFAWMSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEE 78
            I V+FAWMSSEER+LKN+V+LYSSL W+SLVCHSQFLNMF PDKA  LA ++++ +V+E
Sbjct: 22  AIVVVFAWMSSEERNLKNHVDLYSSLLWDSLVCHSQFLNMFLPDKAADLASNVVSELVKE 81

Query: 79  LKTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDF 138
           LK +P PLVF SFSGGP ACMYKVLQI+EG C+  LN DD RLVR+CISG IYDS PVDF
Sbjct: 82  LKAKPVPLVFASFSGGPNACMYKVLQILEGTCETGLNPDDCRLVRNCISGFIYDSCPVDF 141

Query: 139 TSVLGREFIVHPSVLKMSRPPKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSM 198
           TS LG    VHP+ LKMS PPK   W  N I+  LD +FLN+FESQRAEYWQTLYS++ M
Sbjct: 142 TSDLGARLAVHPTTLKMSSPPKPFVWAANGIASSLDYVFLNRFESQRAEYWQTLYSTIIM 201

Query: 199 GAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVT 258
             PYLI+CSE+DDLA YQ I NF+ RLQELG +VKLV  + SPH GH+R    DYKAAV+
Sbjct: 202 RVPYLILCSENDDLAPYQTIHNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVS 261

Query: 259 ELLGKAAAVYSQRIRRLEGERLGVEGT-HDEISEPIGDLRKAVESPNQSFCGVTIQPSDN 317
           E L KAA+VYSQ+ R L  +R  ++GT HDEI+EPI  L ++    N+SF G  +  +D+
Sbjct: 262 EFLSKAASVYSQKTRSL--DREAMKGTCHDEITEPIQSLGQSTSGLNRSFNGTPLVTTDH 319

Query: 318 FFMPSSVGYYEGRDMGSLQDEHKEDLIHLHNP---PRINAHGVLGQVLFDVCVPKTVEDW 374
           FF+PS+VGYY GRD G +QDEHK+DLI L N      +  +GVLGQ+LFDV +PK VEDW
Sbjct: 320 FFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQILFDVYIPKNVEDW 379

Query: 375 DIKSSAS 381
           DIK S +
Sbjct: 380 DIKLSET 386


>AT2G15695.1 | Symbols:  | unknown protein | chr2:6834194-6836336
           REVERSE
          Length = 420

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/395 (51%), Positives = 270/395 (68%), Gaps = 10/395 (2%)

Query: 19  GIAVLFAWMSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEE 78
           G+ V+F W S  E  L N+V+LYSSLGWNSLVC + FL   +P+ A +LAF +L+ +VEE
Sbjct: 30  GVVVIFVWSSINENQLMNFVDLYSSLGWNSLVCRADFLTAVYPEMALSLAFHLLSELVEE 89

Query: 79  LKTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDF 138
           LK+RPCP++F++FSG PKACMYKVLQ+I   C+ Q++ DD +LVR C+SGH+YDS P+DF
Sbjct: 90  LKSRPCPVIFLAFSGAPKACMYKVLQVIMDDCEAQIHPDDSQLVRTCLSGHVYDSGPLDF 149

Query: 139 TSVLGREFIVHPSVLKMSRPPKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSM 198
           TS L  +F +HP++ +MS P +++SW+   IS  LD L+L +FESQR+EYWQ LYSSV +
Sbjct: 150 TSDLNVKFALHPTIRRMSGPSRLVSWVAKGISSGLDGLYLTRFESQRSEYWQALYSSVEI 209

Query: 199 GAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVT 258
           GAPYLI+CSE+D+LA  QVI +F+ +LQELG +VK+V    SPH GH+   P  Y+A ++
Sbjct: 210 GAPYLILCSENDELAPLQVISSFTHQLQELGGEVKVVKWKNSPHAGHYAHNPIQYRAVIS 269

Query: 259 ELLGKAAAVYSQRIRRLEGERLGVEGTHDEISEPIGDLRKAVESPNQSFCGVTIQPSDNF 318
             L KA +V+  +IR+L GER     THDEISE I DL+K   + NQS   V   P D+F
Sbjct: 270 NFLEKAISVHLHKIRQL-GER---AHTHDEISELICDLQKVAVNSNQSLRRVATGPCDHF 325

Query: 319 FMPSSVGY---YEGRDMGSLQDEHKE-DLIHLHNPPRINAHGVLGQVLFDVCVPKTVEDW 374
           F+PSS  Y       D  S Q+E +E        P  INAH VLGQ LFD CVPK +E W
Sbjct: 326 FLPSSAPYQSNSNNSDPSSSQEEQRERSSFRPLQPTSINAHSVLGQFLFDSCVPKNIEGW 385

Query: 375 DIKSSASLSRQPY--SSTRRHAPFNPIKCILRSRL 407
           DI+ +  L+ QPY  SS+R+++     K   RSRL
Sbjct: 386 DIRFAGCLNGQPYATSSSRKNSNLGFKKRFFRSRL 420


>AT5G44250.2 | Symbols:  | unknown protein | chr5:17823876-17825153
           REVERSE
          Length = 302

 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/287 (60%), Positives = 210/287 (73%), Gaps = 6/287 (2%)

Query: 99  MYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDFTSVLGREFIVHPSVLKMSRP 158
           MYKVLQI+EG C+  LN DD RLVR+CISG IYDS PVDFTS LG    VHP+ LKMS P
Sbjct: 1   MYKVLQILEGTCETGLNPDDCRLVRNCISGFIYDSCPVDFTSDLGARLAVHPTTLKMSSP 60

Query: 159 PKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSMGAPYLIVCSESDDLASYQVI 218
           PK   W  N I+  LD +FLN+FESQRAEYWQTLYS++ M  PYLI+CSE+DDLA YQ I
Sbjct: 61  PKPFVWAANGIASSLDYVFLNRFESQRAEYWQTLYSTIIMRVPYLILCSENDDLAPYQTI 120

Query: 219 CNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVTELLGKAAAVYSQRIRRLEGE 278
            NF+ RLQELG +VKLV  + SPH GH+R    DYKAAV+E L KAA+VYSQ+ R L  +
Sbjct: 121 HNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVSEFLSKAASVYSQKTRSL--D 178

Query: 279 RLGVEGT-HDEISEPIGDLRKAVESPNQSFCGVTIQPSDNFFMPSSVGYYEGRDMGSLQD 337
           R  ++GT HDEI+EPI  L ++    N+SF G  +  +D+FF+PS+VGYY GRD G +QD
Sbjct: 179 REAMKGTCHDEITEPIQSLGQSTSGLNRSFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQD 238

Query: 338 EHKEDLIHLHNP---PRINAHGVLGQVLFDVCVPKTVEDWDIKSSAS 381
           EHK+DLI L N      +  +GVLGQ+LFDV +PK VEDWDIK S +
Sbjct: 239 EHKQDLICLSNTQTNESVKPNGVLGQILFDVYIPKNVEDWDIKLSET 285


>AT3G19970.1 | Symbols:  | unknown protein | chr3:6959644-6961367
           FORWARD
          Length = 434

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 29/267 (10%)

Query: 20  IAVLFAWMSSEERHLKNYVELYSSLGWNSLVCH---SQFLNMFFPDKAEALAFDILNRIV 76
           + VL  W+ S+++HLK Y + Y+S G++ +      ++ ++     KAE     ++N + 
Sbjct: 164 VVVLLGWLGSKQKHLKKYADWYTSKGYHVITFTLPMNEIMSYQVGGKAEKNIESLVNHLA 223

Query: 77  EEL-KTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCI--SGHIYDS 133
           + L + +   LVF +FS         +L+  +   K   +L  R  V+ CI  S  +  +
Sbjct: 224 DWLDEEQKKNLVFHTFSNTGWLTYGAILEKFQ---KQDSSLMGR--VKGCIVDSAPVAAA 278

Query: 134 SPVDFTSVLGREFIVHPSV--------------LKMSRP-PKVLSWMVNSISDCLDALFL 178
            P  + S     F+   SV              + +S+P P      +  + +   A+ L
Sbjct: 279 DPTVWASGFSAAFLKKSSVATKGSASSSYESNGINISQPKPAATETALLLVLEKFFAVIL 338

Query: 179 N--KFESQRAEYWQTLYSSVSMGAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVT 236
           N  K   + A+   TL S+     P L + S +D +   + + +F    ++ G +V+   
Sbjct: 339 NLPKVNRRLADVLDTL-STAQPSCPQLYIYSSADRVIPVEQVESFIVEQRKAGHEVRACN 397

Query: 237 MSGSPHVGHFRLYPFDYKAAVTELLGK 263
              SPHV HFR  P  Y A +   +  
Sbjct: 398 FISSPHVDHFRSNPELYTAELNHFMNN 424