Jatropha Genome Database

JcCA0304521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304521.10 - phase: 0 /partial/short
         (44 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58110.1 | Symbols:  | ATPase activator/ chaperone binding | ...    49   9e-07

>AT5G58110.1 | Symbols:  | ATPase activator/ chaperone binding |
           chr5:23515275-23516479 FORWARD
          Length = 196

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           ++V+LS++K+L QQ KQ+I  D+K FL+P+R KL  FEQELKDR
Sbjct: 153 VDVKLSEDKELSQQLKQRIKLDMKQFLEPIRLKLGLFEQELKDR 196