Jatropha Genome Database
- JcCA0304431.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0304431.30 - phase: 1 /pseudo/partial
(119 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anio... 114 1e-26
AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic an... 112 6e-26
AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESIST... 111 9e-26
AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anio... 96 5e-21
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL... 70 4e-13
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anio... 69 7e-13
AT5G03280.1 | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN... 54 2e-08
>AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:17309043-17311308 REVERSE
Length = 530
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/63 (82%), Positives = 58/63 (92%)
Query: 54 SVLDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
+ LDPGNLE DLQAGAIAGYSLLWLL+WAT MGLLIQ+LSARVGVA GRHLA+LCR+EYP
Sbjct: 81 AFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYP 140
Query: 114 NWS 116
W+
Sbjct: 141 TWA 143
>AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion
transmembrane transporter/ manganese ion transmembrane
transporter/ metal ion transmembrane transporter |
chr5:26861822-26863580 FORWARD
Length = 512
Score = 112 bits (279), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/63 (79%), Positives = 58/63 (92%)
Query: 54 SVLDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
+ LDPGNLE DLQAGAIAGYSL+WLL+WAT +GLLIQ+LSAR+GVA GRHLA+LCREEYP
Sbjct: 65 AFLDPGNLESDLQAGAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYP 124
Query: 114 NWS 116
W+
Sbjct: 125 TWA 127
>AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL
RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic
anion transmembrane transporter/ manganese ion
transmembrane transporter/ metal ion transmembrane
transporter | chr2:9856422-9858565 REVERSE
Length = 509
Score = 111 bits (278), Expect = 9e-26, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 59/65 (90%)
Query: 54 SVLDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
+ LDPGNLE DLQAGA+AGYSLLWLL+WAT MGLL+Q+LSAR+GVA GRHLA+LCR+EYP
Sbjct: 69 AFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYP 128
Query: 114 NWSTI 118
W+ +
Sbjct: 129 TWARM 133
>AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr4:10317785-10319660 REVERSE
Length = 530
Score = 95.9 bits (237), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 60/65 (92%)
Query: 54 SVLDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
+ LDPGN+E DLQAGA+AGYSLLWLL+WAT+MGLL+Q+LSAR+GVA GRHLA++CR EYP
Sbjct: 83 AFLDPGNIEGDLQAGAVAGYSLLWLLLWATLMGLLMQLLSARIGVATGRHLAEICRSEYP 142
Query: 114 NWSTI 118
+W+ I
Sbjct: 143 SWARI 147
>AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL
RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic
anion transmembrane transporter/ manganese ion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:30373066-30375644 REVERSE
Length = 532
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 56 LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEY--- 112
+DPGN E DLQAGA Y LLW+++ A+ L+IQ L+A +GV G+HLA+ CR EY
Sbjct: 61 IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120
Query: 113 PNW 115
PN+
Sbjct: 121 PNF 123
>AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anion
transmembrane transporter/ metal ion transmembrane
transporter | chr1:5482202-5485066 REVERSE
Length = 527
Score = 68.6 bits (166), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 56 LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEY--- 112
+DPGN E DLQ+GA Y LLW+++ A+ L+IQ L+A +GV G+HLA+ CR EY
Sbjct: 53 IDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKV 112
Query: 113 PNW 115
PN+
Sbjct: 113 PNF 115
>AT5G03280.1 | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 |
EIN2 (ETHYLENE INSENSITIVE 2); transporter |
chr5:788589-793066 FORWARD
Length = 1294
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 56 LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYPNW 115
+DPG +++ GA GY L+ + + +L Q ++AR+ V G+HLA++C EEY W
Sbjct: 33 IDPGKWVANIEGGARFGYDLVAITLLFNFAAILCQYVAARISVVTGKHLAQICNEEYDKW 92
Query: 116 STI 118
+ +
Sbjct: 93 TCM 95