Jatropha Genome Database

JcCA0304431.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304431.20 - phase: 0 /TE
         (1368 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...   100   8e-21

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 6/135 (4%)

Query: 715 LQHLRLVLNTLQENELFINLKKCSFMTKEQILFLGY--VVSSKGIHVDDRKIEAIRNLPI 772
           + HL +VL   ++++ + N KKC+F  + QI +LG+  ++S +G+  D  K+EA+   P 
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAF-GQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPE 59

Query: 773 PKNITEVHNFHGLATFYRLFIRNFSSIIAPITDCLKKERVHQFIWIEAANKSFEEIKDKL 832
           PKN TE+  F GL  +YR F++N+  I+ P+T+ LKK  +    W E A  +F+ +K  +
Sbjct: 60  PKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLK---WTEMAALAFKALKGAV 116

Query: 833 TSAPILALLNFDKLF 847
           T+ P+LAL +    F
Sbjct: 117 TTLPVLALPDLKLPF 131