Jatropha Genome Database

JcCA0304141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.30 - phase: 0 /partial
         (295 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE    470   e-133

>AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE
          Length = 982

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 220/295 (74%), Positives = 256/295 (86%)

Query: 1   VVHTQAKVIADQEVMYKYISRNLLFVVTVAPKAAGGIGSATPDESWLVAYLIDTITGRIL 60
           VVHTQAKV  DQ+++YKY+SRNLLFV TV+PK AG IGS TP+ES LV YLIDTITGRIL
Sbjct: 688 VVHTQAKVNTDQDLLYKYVSRNLLFVATVSPKGAGEIGSVTPEESSLVVYLIDTITGRIL 747

Query: 61  HRMTHHGSHGPVRAVFSENWVVYHYFNLKAHRYEMSVIEIYDQSRADNKDVLKLVLGKHN 120
           HR++H G  GPV AVFSENWVVYHYFNL+AH+YE++V+EIYDQSRA+NK+V KL+LGKHN
Sbjct: 748 HRLSHQGCQGPVHAVFSENWVVYHYFNLRAHKYEVTVVEIYDQSRAENKNVWKLILGKHN 807

Query: 121 LTAPVSSYSRPEVTTKSQSYYFTHSVKAIAVTFTAKGITSKQLLIGTIGDQVLALDKRFL 180
           LTAP++SYSRPEV TKSQSY+F  SVK IAVT TAKGITSKQLLIGTIGDQ+LALDKRF+
Sbjct: 808 LTAPITSYSRPEVFTKSQSYFFAQSVKTIAVTSTAKGITSKQLLIGTIGDQILALDKRFV 867

Query: 181 DPRRTINPTQAEKEEGIIPLTDSLPIIPQSYVTHALQVEGLRGIISAPAKLESTTLVFVY 240
           DPRRT+NP+QAEKEEGIIPLTD+LPIIPQ+YVTH+ +VEGLRGI++AP+KLESTT VF Y
Sbjct: 868 DPRRTLNPSQAEKEEGIIPLTDTLPIIPQAYVTHSHKVEGLRGIVTAPSKLESTTHVFAY 927

Query: 241 GVDLFFTRLAPSRTYDSLTEDFSYXXXXXXXXXXXXXXXXXWILSERKELQDKWR 295
           GVDLF+TRLAPS+TYDSLT+DFSY                 W+LSE+KEL +KWR
Sbjct: 928 GVDLFYTRLAPSKTYDSLTDDFSYALLLITIVALVAAIYITWVLSEKKELSEKWR 982