Jatropha Genome Database

JcCA0304141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.20 - phase: 0 
         (350 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11550.1 | Symbols:  | binding | chr5:3708203-3709147 REVERSE      217   1e-56
AT1G49780.1 | Symbols: PUB26 | PUB26 (PLANT U-BOX 26); binding /...    62   4e-10
AT3G19380.1 | Symbols: PUB25 | PUB25 (PLANT U-BOX 25); binding /...    52   7e-07

>AT5G11550.1 | Symbols:  | binding | chr5:3708203-3709147 REVERSE
          Length = 314

 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/259 (52%), Positives = 158/259 (61%), Gaps = 16/259 (6%)

Query: 93  FTQWRFPLVNSPLHQHSPAETITQPKTDSPRALVPLPPPIHSDELQELFREAELQLSTGS 152
           FTQWRFP     L Q              P  L        +  LQE F+ AEL L++ S
Sbjct: 63  FTQWRFP---HHLDQTPSTAPPPPHPPPPPPPLP------VTTTLQETFQIAELHLTSVS 113

Query: 153 ESEKLAALHLLERSLVPNPPSDPVCPLELMRGVVVNLKNK---AGAKAATKILLALCLAE 209
           ES+KL AL LLER +VP+PPSDP CP  LMRG+V  L++      AK  TKILLALCLAE
Sbjct: 114 ESDKLLALQLLERVVVPDPPSDPTCPPGLMRGLVSCLRSNNKIVTAKYVTKILLALCLAE 173

Query: 210 GNRHXXXXXXXXXXXXXXXXXXXXPVAERALAALELMCTVEEGAAELRAHALAMPVMVAK 269
           GNRH                       ERALAALELMCT  EGAAE+RAHA+ +P MVA 
Sbjct: 174 GNRHVAVEAGAARAVVETAAGLEISAVERALAALELMCTTAEGAAEVRAHAMTVPAMVAV 233

Query: 270 MGEMEGRGKEYAISALSVVY----GGGVLDEQVHQAPPEEVARAVILALQGDCTARARRK 325
           M  + GRG+EYAIS LSVVY     GG   E++  AP EEVARAV LAL+G+CTAR +RK
Sbjct: 234 MARLAGRGREYAISILSVVYGKGGEGGDSGEEIAVAPAEEVARAVALALEGECTARGKRK 293

Query: 326 GAQLLKALQEFGRADSTQQ 344
           GAQLLK L+E+GR D +Q 
Sbjct: 294 GAQLLKTLEEYGRLDLSQN 312


>AT1G49780.1 | Symbols: PUB26 | PUB26 (PLANT U-BOX 26); binding /
           ubiquitin-protein ligase | chr1:18429024-18430289
           REVERSE
          Length = 421

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 11/175 (6%)

Query: 181 LMRGVVVNLKNKAGAKAATKI----LLALCLAEGNRHXXXXXXXXXXXXXXXXXXXXPV- 235
           +  GV+  LKN   ++ A KI    + ALCL +  RH                       
Sbjct: 243 IFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCD 302

Query: 236 AERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVYGGGVLD 295
            ER LA +EL+C + EG A    HAL +P+MV  +  +  R  EYA  AL  +      +
Sbjct: 303 TERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTA---E 359

Query: 296 EQVH-QAPPEEVARAVILALQGDCTARARRKGAQLLKALQEFGRADST--QQDVN 347
           E+   +A    +   ++L +Q DCT RA+RK   LLK L++    DST    D N
Sbjct: 360 ERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFN 414


>AT3G19380.1 | Symbols: PUB25 | PUB25 (PLANT U-BOX 25); binding /
           ubiquitin-protein ligase | chr3:6714602-6715867 REVERSE
          Length = 421

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 181 LMRGVVVNLKNKAGAKAATKI----LLALCLAEGNRHXXXXXXXXXXXXXXXXXXXXPV- 235
           +  GV+  L+N   ++ A KI    L ALC  +  RH                       
Sbjct: 241 VFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCD 300

Query: 236 AERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVYGGGVLD 295
            ERALA +EL+C   EG A    HAL +P++V  +  +  R  EYA  AL  +      +
Sbjct: 301 TERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAE--E 358

Query: 296 EQVHQAPPEEVARAVILALQGDCTAR 321
               +A    V   ++L +Q +CT R
Sbjct: 359 RWREEAAGAGVVVQLLLMVQSECTER 384