Jatropha Genome Database

JcCA0304111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304111.10 - phase: 0 
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27620.1 | Symbols: CYCH;1 | CYCH;1 (CYCLIN H;1); cyclin-depe...   409   e-114
AT5G48640.1 | Symbols:  | cyclin family protein | chr5:19723653-...    69   5e-12
AT5G48630.1 | Symbols:  | cyclin family protein | chr5:19721663-...    64   1e-10
AT1G35440.1 | Symbols: CYCT1;1 | CYCT1;1 (CYCLIN T1;1); cyclin-d...    54   2e-07
AT5G45190.1 | Symbols:  | cyclin family protein | chr5:18277808-...    53   3e-07
AT5G45190.2 | Symbols:  | cyclin family protein | chr5:18277808-...    53   3e-07

>AT5G27620.1 | Symbols: CYCH;1 | CYCH;1 (CYCLIN H;1);
           cyclin-dependent protein kinase/ protein binding /
           protein kinase | chr5:9771762-9774684 FORWARD
          Length = 336

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/303 (65%), Positives = 239/303 (78%), Gaps = 14/303 (4%)

Query: 1   MADFQTSTHRAKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSLSYPEPQVNT 60
           MADFQTST RAKWIFTPQ+L E++KA NQRA QMLEK GTT++EVD  GSL+YP+ +V +
Sbjct: 1   MADFQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGS 60

Query: 61  AENAYKHSRPKPLSVEEEQFMRVYYEYKLRE------------ATALIYFKRFYLQWSVM 108
            + A K  + KPLS +EE+FMR +YE K++E            ATAL YFKRFYLQWSVM
Sbjct: 61  GDQADK--KLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQWSVM 118

Query: 109 EHDPKNIMLTCIYSACKIEENHVSAEELGKGISQDHHMILNYEMIILQSLEFDLIVYAPY 168
           +H PK IMLTC+Y+ACKIEENHVSAEE+GKGI+QDH +IL YEM +LQSLEFDLIVYAPY
Sbjct: 119 QHHPKEIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPY 178

Query: 169 RSVEGFINDMEEFCHATDDQIQMLKELQSSAVAEVDKIMFTDAPLLFPPGQLALAALRSA 228
           R++EGF+N+MEEF  A DD+IQ L+ L   A AE DK+M TDAPLLFPPGQLALA+LR A
Sbjct: 179 RAIEGFVNNMEEFLQARDDEIQKLESLLKGATAEADKVMLTDAPLLFPPGQLALASLRIA 238

Query: 229 NEMHQVLDFERYLGDILARQNSIHTMSDLFESLDAINSWVKKYKFPTEKDMKHINRKLKS 288
           N +  V+DF+RYL +I+++ NS HT S+L + LD I   VK YK P+EKDMKHINRKLKS
Sbjct: 239 NGVLGVIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKCPSEKDMKHINRKLKS 298

Query: 289 CWG 291
           C G
Sbjct: 299 CLG 301


>AT5G48640.1 | Symbols:  | cyclin family protein |
           chr5:19723653-19725641 REVERSE
          Length = 253

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 24/186 (12%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEENHVSAEELG---KGISQDHHM-- 146
           ATA+ Y +R Y++ S++E +P+ + LTC+Y A K EE+ V A  L    K +  D +   
Sbjct: 63  ATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFYIKRLYPDEYNKY 122

Query: 147 ----ILNYEMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAE 202
               IL  EM +L++L++ L+V+ PYRS+  F+ D      A  + + M  ++    V +
Sbjct: 123 ELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQD------AALNDVNM-NQITWGIVND 175

Query: 203 VDKIMFTDAPLLFPPGQLALAALRSANEMHQVLDFERYLGDILARQNSIHTMS----DLF 258
             K+   D  L+ PP ++ALA +  A+ +H+  D   +  D+    N +  ++    D +
Sbjct: 176 TYKM---DLILVHPPYRIALACIYIAS-VHREKDITAWFEDLHEDMNLVKNIAMEILDFY 231

Query: 259 ESLDAI 264
           E+   I
Sbjct: 232 ENYRTI 237


>AT5G48630.1 | Symbols:  | cyclin family protein |
           chr5:19721663-19723200 REVERSE
          Length = 253

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 20/173 (11%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEENHVSAEELG---KGISQDHHM-- 146
           ATA+ Y +R Y + S+ E++P+ +  TC+Y ACK EE+ V A+ L    K +  D     
Sbjct: 63  ATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFYMKKLYADEKFRY 122

Query: 147 ----ILNYEMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAE 202
               IL  EM +L++L F L+V+ PYRS+  F+ D        +D    +  L    V +
Sbjct: 123 EIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQD-----SGIND--TSMTHLTWGLVND 175

Query: 203 VDKIMFTDAPLLFPPGQLALAALRSANEMHQVLDFERYLGDILARQNSIHTMS 255
             ++   D  L+ PP  + LA +  A+ +H+  D + +  ++    N +  ++
Sbjct: 176 TYRM---DLILIHPPFLITLACIYIAS-VHKEKDIKTWFEELSVDMNIVKNIA 224


>AT1G35440.1 | Symbols: CYCT1;1 | CYCT1;1 (CYCLIN T1;1);
           cyclin-dependent protein kinase | chr1:13035294-13036037
           REVERSE
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 36/195 (18%)

Query: 59  NTAENAYKHS--RPKPLSVEEEQFMRVYYEYKLRE------------ATALIYFKRFYLQ 104
           NT E   K S  R   ++++EE F R  Y   L+E            ATA++  +RF+ +
Sbjct: 9   NTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTR 68

Query: 105 WSVMEHDPKNIMLTCIYSACKIEENHVSA--------------EELGKGISQDHHMILNY 150
            S+ ++DPK + + C++ A K+E +   A              E L     +    +L  
Sbjct: 69  QSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPLRDVFERLKMTVLTG 128

Query: 151 EMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAEVDKIMFTD 210
           E ++L +LE DL +  PY+ V  ++    +    T+D     + L  +A   V+  + T 
Sbjct: 129 EKLVLSTLECDLEIEHPYKLVMDWVKRSVK----TEDG----RRLCQAAFNFVNDSLRTS 180

Query: 211 APLLFPPGQLALAAL 225
             L F P Q+A AA+
Sbjct: 181 LCLQFGPSQIASAAI 195


>AT5G45190.1 | Symbols:  | cyclin family protein |
           chr5:18277808-18280733 REVERSE
          Length = 579

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 21/99 (21%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEEN--------HVSAEELGK---GI 140
           ATA+I+  RF+ + S  ++D + I   C++ A K+EE          VS E + K   G 
Sbjct: 82  ATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGA 141

Query: 141 SQ----------DHHMILNYEMIILQSLEFDLIVYAPYR 169
           SQ             +ILN E I+L +L FDL VY PY+
Sbjct: 142 SQKIKQKEVYEQQKELILNGEKIVLSTLGFDLNVYHPYK 180


>AT5G45190.2 | Symbols:  | cyclin family protein |
           chr5:18277808-18280733 REVERSE
          Length = 590

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 21/99 (21%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEEN--------HVSAEELGK---GI 140
           ATA+I+  RF+ + S  ++D + I   C++ A K+EE          VS E + K   G 
Sbjct: 93  ATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGA 152

Query: 141 SQ----------DHHMILNYEMIILQSLEFDLIVYAPYR 169
           SQ             +ILN E I+L +L FDL VY PY+
Sbjct: 153 SQKIKQKEVYEQQKELILNGEKIVLSTLGFDLNVYHPYK 191