Jatropha Genome Database

JcCA0303171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.20 - phase: 0 /partial
         (286 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47930.1 | Symbols: ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE ...   485   e-137
AT3G47930.2 | Symbols: ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE ...   475   e-134

>AT3G47930.1 | Symbols: ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE
           DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/
           galactonolactone dehydrogenase | chr3:17684500-17687426
           FORWARD
          Length = 610

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/286 (79%), Positives = 251/286 (87%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVISMKLVTPAKGTIE+S+EKDPELF+LARCGLGGLGVVAEVTLQ
Sbjct: 226 VGAHGTGARLPPIDEQVISMKLVTPAKGTIELSREKDPELFHLARCGLGGLGVVAEVTLQ 285

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CV R ELVEHTY+SN+++IKKNHKKLLS NKHVKYLYIPYTD+VV+VTCNP+SKW GPPK
Sbjct: 286 CVARHELVEHTYVSNLQEIKKNHKKLLSANKHVKYLYIPYTDTVVVVTCNPVSKWSGPPK 345

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
            KPKY+ DEA++HVRDLY+ES+ KYR  +   K+ D  E +I ELSFTELRDKLLALDPL
Sbjct: 346 DKPKYTTDEAVQHVRDLYRESIVKYRVQDSGKKSPDSSEPDIQELSFTELRDKLLALDPL 405

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           N  HV KVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSE+CFPAGTL+ PSMKDLE
Sbjct: 406 NDVHVAKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSESCFPAGTLANPSMKDLE 465

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTACXXXXXXXXXXXXKDDIFSW 286
           YIEELK+LI+KE IPAPAPIEQRWTA             +DDIFSW
Sbjct: 466 YIEELKKLIEKEAIPAPAPIEQRWTARSKSPISPAFSTSEDDIFSW 511


>AT3G47930.2 | Symbols: ATGLDH | ATGLDH (L-GALACTONO-1,4-LACTONE
           DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/
           galactonolactone dehydrogenase | chr3:17684500-17686940
           FORWARD
          Length = 512

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/266 (83%), Positives = 244/266 (91%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVISMKLVTPAKGTIE+S+EKDPELF+LARCGLGGLGVVAEVTLQ
Sbjct: 226 VGAHGTGARLPPIDEQVISMKLVTPAKGTIELSREKDPELFHLARCGLGGLGVVAEVTLQ 285

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CV R ELVEHTY+SN+++IKKNHKKLLS NKHVKYLYIPYTD+VV+VTCNP+SKW GPPK
Sbjct: 286 CVARHELVEHTYVSNLQEIKKNHKKLLSANKHVKYLYIPYTDTVVVVTCNPVSKWSGPPK 345

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
            KPKY+ DEA++HVRDLY+ES+ KYR  +   K+ D  E +I ELSFTELRDKLLALDPL
Sbjct: 346 DKPKYTTDEAVQHVRDLYRESIVKYRVQDSGKKSPDSSEPDIQELSFTELRDKLLALDPL 405

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           N  HV KVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSE+CFPAGTL+ PSMKDLE
Sbjct: 406 NDVHVAKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSESCFPAGTLANPSMKDLE 465

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTA 266
           YIEELK+LI+KE IPAPAPIEQRWTA
Sbjct: 466 YIEELKKLIEKEAIPAPAPIEQRWTA 491