Jatropha Genome Database
- JcCA0302361.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0302361.30 - phase: 0
(198 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54850.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 227 5e-60
AT1G54840.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 152 1e-37
AT1G20870.1 | Symbols: | LOCATED IN: cellular_component unknown... 125 2e-29
AT1G76440.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 109 1e-24
AT1G76440.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 109 1e-24
AT1G76440.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 109 1e-24
AT1G54840.2 | Symbols: | unknown protein | chr1:20453034-204539... 54 9e-08
>AT1G54850.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Heat shock protein Hsp20 (InterPro:IPR002068),
HSP20-like chaperone (InterPro:IPR008978); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G54840.1); Has 35 Blast hits to 35 proteins in
7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
- 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:20454440-20455994 FORWARD
Length = 206
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 146/188 (77%), Gaps = 8/188 (4%)
Query: 11 RNHQQPVLAVPPLNSVPYIGSPGMVVDDTPLPAEDDAQPVEKVG-PSMVFLPPSTTQKER 69
RN Q +L V PLNS+PYIG V + + VEKVG P+M+FLP S + E
Sbjct: 21 RNPQ--ILEVTPLNSMPYIGP----VTHASMSSNRMNDSVEKVGGPAMIFLP-SDSSSEF 73
Query: 70 DNVLASAKGAVALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEP 129
N+++ K VAL+GSAAMG +G +GL+DI ES+D+Y FRV+LPGV+RDEKEFSC+IEP
Sbjct: 74 SNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIEP 133
Query: 130 DGTILIKGVTTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDG 189
DG I+IKG TTTGE+TVCK++QIF+M TQNLCPPGHF+I FQLPGPV++++F G+FG+DG
Sbjct: 134 DGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDG 193
Query: 190 MLEGIVKK 197
+LEG+VKK
Sbjct: 194 VLEGVVKK 201
>AT1G54840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: 6 growth stages; CONTAINS
InterPro DOMAIN/s: Heat shock protein Hsp20
(InterPro:IPR002068), HSP20-like chaperone
(InterPro:IPR008978); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G54850.1); Has 44
Blast hits to 42 proteins in 10 species: Archae - 0;
Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:20452801-20453932 REVERSE
Length = 349
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 88/106 (83%)
Query: 92 GPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGVTTTGEKTVCKNSQ 151
G +GLMDIGE DDAYLFRVSLPGV RDE+ FSC++E +G +L++GVTTTG K V + S
Sbjct: 237 GLMVGLMDIGECDDAYLFRVSLPGVKRDERYFSCEVEDNGKVLVRGVTTTGGKRVKRYSH 296
Query: 152 IFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVKK 197
+F MQT++LCPPG+FS++F+LPGPV+ +F G+FG DG+LEG+V K
Sbjct: 297 VFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMK 342
>AT1G20870.1 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like
chaperone (InterPro:IPR008978); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi
- 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5
(source: NCBI BLink). | chr1:7259287-7260775 REVERSE
Length = 463
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 93/136 (68%), Gaps = 5/136 (3%)
Query: 60 LPPSTTQKERDNVLASAKGAVALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARD 119
+P S+ KE D A+ +V +G+A+ +G ++G++DIG + AY F+V+LPGV +D
Sbjct: 327 IPFSSEMKESD-----AEPSVVTTGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKD 381
Query: 120 EKEFSCDIEPDGTILIKGVTTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHK 179
EFSC+IE DG ++++G TT GEK + ++S++F M + LCPPG F + F LPGPV+ +
Sbjct: 382 YGEFSCEIESDGKVILEGSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPR 441
Query: 180 QFRGHFGNDGMLEGIV 195
F +F +DG+ EG++
Sbjct: 442 LFSPNFRSDGIFEGVI 457
>AT1G76440.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Heat shock protein Hsp20 (InterPro:IPR002068),
HSP20-like chaperone (InterPro:IPR008978); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:28682371-28682999 REVERSE
Length = 143
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 7/121 (5%)
Query: 80 VALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGV- 138
V +G+A +G VGP +GL+DIG S+ AY+FRVSLPG+ +++ + C+I+ +G + I+GV
Sbjct: 19 VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78
Query: 139 --TTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVK 196
T C ++RMQ Q LCPPG FSITF LPG V+ + F +F +DG+ E +V
Sbjct: 79 PEIAIPSDTGC----LYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVV 134
Query: 197 K 197
K
Sbjct: 135 K 135
>AT1G76440.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Heat shock protein Hsp20 (InterPro:IPR002068),
HSP20-like chaperone (InterPro:IPR008978); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:28682371-28682999 REVERSE
Length = 143
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 7/121 (5%)
Query: 80 VALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGV- 138
V +G+A +G VGP +GL+DIG S+ AY+FRVSLPG+ +++ + C+I+ +G + I+GV
Sbjct: 19 VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78
Query: 139 --TTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVK 196
T C ++RMQ Q LCPPG FSITF LPG V+ + F +F +DG+ E +V
Sbjct: 79 PEIAIPSDTGC----LYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVV 134
Query: 197 K 197
K
Sbjct: 135 K 135
>AT1G76440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Heat shock protein Hsp20 (InterPro:IPR002068),
HSP20-like chaperone (InterPro:IPR008978); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:28682371-28682999 REVERSE
Length = 143
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 7/121 (5%)
Query: 80 VALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGV- 138
V +G+A +G VGP +GL+DIG S+ AY+FRVSLPG+ +++ + C+I+ +G + I+GV
Sbjct: 19 VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78
Query: 139 --TTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVK 196
T C ++RMQ Q LCPPG FSITF LPG V+ + F +F +DG+ E +V
Sbjct: 79 PEIAIPSDTGC----LYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVV 134
Query: 197 K 197
K
Sbjct: 135 K 135
>AT1G54840.2 | Symbols: | unknown protein | chr1:20453034-20453932
REVERSE
Length = 268
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 92 GPALGLMDIGESDDAYLFRVSLPGVARDE 120
G +GLMDIGE DDAYLFRVSLPGV RDE
Sbjct: 237 GLMVGLMDIGECDDAYLFRVSLPGVKRDE 265