Jatropha Genome Database

JcCA0302361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302361.20 + phase: 0 
         (232 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27440.1 | Symbols:  | unknown protein | chr5:9689647-9690297...    47   9e-06

>AT5G27440.1 | Symbols:  | unknown protein | chr5:9689647-9690297
           REVERSE
          Length = 216

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 51  HQTQIWNPIVCASKKRRGSGSQKLSKIVPKLVYIAASNLKILPEPFNLVIAEXXXXXXXX 110
           H+TQ  + ++CA K+++  G +++++ +   + + A NL+ILP+P +LVIA+        
Sbjct: 36  HRTQFQSLVLCAKKRKQRVGYRRITRFLFNSLSLLAPNLQILPQPLDLVIADLGGVDGGG 95

Query: 111 XXXXXXXXXX---NSDGWRRRKN 130
                          DGWRR+KN
Sbjct: 96  GGRGGLGFWRGWGRFDGWRRKKN 118