Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302271.10 + phase: 0 
         (63 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61310.4 | Symbols:  | cytochrome c oxidase subunit Vc, putat...    87   3e-18
AT5G61310.3 | Symbols:  | cytochrome c oxidase subunit Vc, putat...    87   3e-18
AT5G61310.2 | Symbols:  | cytochrome c oxidase subunit Vc, putat...    87   3e-18
AT5G61310.1 | Symbols:  | cytochrome c oxidase subunit Vc, putat...    87   3e-18
AT2G47380.1 | Symbols:  | cytochrome c oxidase subunit Vc family...    86   6e-18
AT5G40382.1 | Symbols:  | cytochrome-c oxidase | chr5:16155486-1...    70   2e-13

>AT5G61310.4 | Symbols:  | cytochrome c oxidase subunit Vc,
          putative / COX5C, putative | chr5:24653543-24653737
          REVERSE
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 44/63 (69%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG KIAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLE+GEI VV
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 61 VDE 63
          V E
Sbjct: 61 VTE 63


>AT5G61310.3 | Symbols:  | cytochrome c oxidase subunit Vc,
          putative / COX5C, putative | chr5:24653543-24653737
          REVERSE
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 44/63 (69%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG KIAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLE+GEI VV
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 61 VDE 63
          V E
Sbjct: 61 VTE 63


>AT5G61310.2 | Symbols:  | cytochrome c oxidase subunit Vc,
          putative / COX5C, putative | chr5:24653543-24653737
          REVERSE
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 44/63 (69%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG KIAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLE+GEI VV
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 61 VDE 63
          V E
Sbjct: 61 VTE 63


>AT5G61310.1 | Symbols:  | cytochrome c oxidase subunit Vc,
          putative / COX5C, putative | chr5:24653543-24653737
          REVERSE
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 44/63 (69%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG KIAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLE+GEI VV
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 61 VDE 63
          V E
Sbjct: 61 VTE 63


>AT2G47380.1 | Symbols:  | cytochrome c oxidase subunit Vc family
          protein / COX5C family protein | chr2:19441694-19441888
          FORWARD
          Length = 64

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 44/63 (69%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG K+AHATLKGPSVVKE              WKMHHWNEQRK R FYDLLE+GEISVV
Sbjct: 1  MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 61 VDE 63
            E
Sbjct: 61 AAE 63


>AT5G40382.1 | Symbols:  | cytochrome-c oxidase |
          chr5:16155486-16155683 REVERSE
          Length = 65

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 38/59 (64%)

Query: 5  KIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVVVDE 63
          KI  A  KGPSVVKE              WKMHHWN QR+ + FYDLLEKGEISVVV++
Sbjct: 6  KIGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVED 64