Jatropha Genome Database

JcCA0302221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.20 - phase: 0 /partial
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | IMS1 (2-ISOPROPYLMA...   240   4e-64
AT1G18500.1 | Symbols: MAML-4, IPMS1 | MAML-4 (METHYLTHIOALKYLMA...   234   2e-62

>AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | IMS1
           (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate
           synthase | chr1:27842258-27845566 FORWARD
          Length = 631

 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 3   QRVTDADLLALVSDEVFQPEIVWQLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGTG 62
           +RVTDADL+ALVSDEVFQPE VW+L D+QITCGTLGLST+TVKL D++G++H+ACSVGTG
Sbjct: 464 KRVTDADLIALVSDEVFQPEAVWKLLDMQITCGTLGLSTSTVKLADSDGKEHVACSVGTG 523

Query: 63  PVDAAYKAVDLIVKEPVELLEYSMTAVTGGIDAIATTRVLICGDNH--KIDAITGEPSRR 120
           PVDAAYKAVDLIVKEP  LLEYSM AVT GIDAIATTRVLI GDN+    +A+TGE   R
Sbjct: 524 PVDAAYKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVER 583

Query: 121 TFSGSGAGMDIVVSSVKAYIGALNKMLAVNSQQLSTTKT 159
           TFSG+GAGMDIVVSSVKAY+GALNKML       + +KT
Sbjct: 584 TFSGTGAGMDIVVSSVKAYVGALNKMLGFKEHTSTLSKT 622


>AT1G18500.1 | Symbols: MAML-4, IPMS1 | MAML-4
           (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4);
           2-isopropylmalate synthase | chr1:6369347-6372861
           FORWARD
          Length = 631

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 131/147 (89%), Gaps = 2/147 (1%)

Query: 3   QRVTDADLLALVSDEVFQPEIVWQLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGTG 62
           +RVTDAD++ALVSDEVFQPE VW+L D+QITCGTLGLSTATVKL DA+G++H+ACS+GTG
Sbjct: 466 KRVTDADIIALVSDEVFQPEAVWKLLDIQITCGTLGLSTATVKLADADGKEHVACSIGTG 525

Query: 63  PVDAAYKAVDLIVKEPVELLEYSMTAVTGGIDAIATTRVLICGDNH--KIDAITGEPSRR 120
           PVD+AYKAVDLIVKEP  LLEYSM AVT GIDAIATTRVLI G N     +AITGE  +R
Sbjct: 526 PVDSAYKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQR 585

Query: 121 TFSGSGAGMDIVVSSVKAYIGALNKML 147
           TFSG+GAGMDIVVSSVKAY+GALNKM+
Sbjct: 586 TFSGTGAGMDIVVSSVKAYVGALNKMM 612