Jatropha Genome Database

JcCA0302221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.10 + phase: 0 /pseudo
         (352 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47790.1 | Symbols:  | F-box family protein | chr1:17600004-1...    60   2e-09
AT2G02030.1 | Symbols:  | F-box family protein | chr2:482335-483...    57   1e-08
AT2G16220.1 | Symbols:  | F-box family protein | chr2:7030155-70...    52   5e-07
AT3G23880.1 | Symbols:  | F-box family protein | chr3:8622061-86...    51   1e-06
AT1G12870.1 | Symbols:  | S locus F-box-related / SLF-related | ...    51   1e-06
AT5G22791.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   2e-06
AT2G41473.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   2e-06
AT2G16450.1 | Symbols:  | F-box family protein | chr2:7131520-71...    50   2e-06
AT2G15640.1 | Symbols:  | F-box family protein | chr2:6816792-68...    50   3e-06
AT2G23160.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    49   4e-06
AT3G17570.1 | Symbols:  | F-box family protein | chr3:6009413-60...    49   5e-06
AT3G17280.1 | Symbols:  | F-box family protein | chr3:5903453-59...    49   5e-06
AT4G38870.1 | Symbols:  | F-box family protein | chr4:18132583-1...    48   8e-06

>AT1G47790.1 | Symbols:  | F-box family protein |
           chr1:17600004-17601173 REVERSE
          Length = 389

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 24/135 (17%)

Query: 6   DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC--------- 56
           D+  +IL R+PVKS++RF+CV + W S+  +P FI  +  +S++ ++L+FC         
Sbjct: 28  DLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKLFV 87

Query: 57  ------HYDYEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSGSLY 110
                 HYD               L P     PS  E         +GL+C +    ++ 
Sbjct: 88  FSIPKHHYDSNSSSQAAIDRFQVKL-PQEFSYPSPTESV-------HGLICFHV-LATVI 138

Query: 111 LWNPATREYINTGYP 125
           +WNP+ R+++    P
Sbjct: 139 VWNPSMRQFLTLPKP 153


>AT2G02030.1 | Symbols:  | F-box family protein | chr2:482335-483829
           FORWARD
          Length = 334

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 1   MNLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQH--LNRSASSKTLIFCHY 58
           +++  +IV +IL R+PVKSL RF+ V + W +L  +  F  +H  L +S   K L  C  
Sbjct: 37  IHIPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKGCKLLFVCD- 95

Query: 59  DYEXXXXXXXXXXXXXLTPVILHKPSVLEGS-------------DILGSCNNGLVCLYAP 105
           D+              L  V L K SV EG              DI  SC +GLVC Y  
Sbjct: 96  DF-----VDRAEDTLFLKTVALEKTSVSEGDEQAFEFEGYKGFLDISESC-DGLVCFYDT 149

Query: 106 SGSLYLWNPATREYIN 121
           + ++ + NPAT  +I 
Sbjct: 150 TRAVEVMNPATTMFIE 165


>AT2G16220.1 | Symbols:  | F-box family protein |
          chr2:7030155-7031378 REVERSE
          Length = 407

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 3  LLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC 56
          L  D++ ++LSR+P+KS+ RF CV + W S+F +P F    L RS++   L+F 
Sbjct: 6  LTNDLILEVLSRLPLKSVARFHCVSKRWASMFGSPYFKELFLTRSSAKPRLLFA 59


>AT3G23880.1 | Symbols:  | F-box family protein |
           chr3:8622061-8623155 REVERSE
          Length = 364

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQH--------LNRSASSKTL 53
           NL  +++ +IL R+PVKSL RFKCV  SW SL     F  +H           S  S   
Sbjct: 13  NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYG 72

Query: 54  IFCHYDYEXXXXXXXXXXXXXLTPVILHKPSVLEGSD---ILGSCNNGLVCLYAP-SGSL 109
           +     Y                 V  H   +L G D   ++G+C +GLVC +     SL
Sbjct: 73  VITTSRYHLKSCCIHSLYNASTVYVSEHDGELL-GRDYYQVVGTC-HGLVCFHVDYDKSL 130

Query: 110 YLWNPATR 117
           YLWNP  +
Sbjct: 131 YLWNPTIK 138


>AT1G12870.1 | Symbols:  | S locus F-box-related / SLF-related |
           chr1:4387129-4389110 REVERSE
          Length = 416

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASS-----KTLIFC 56
           +L +D+V +I  ++PVK+LMRFK + + W S  E+  F  +HL  +  S     K +I  
Sbjct: 32  SLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMIIT 91

Query: 57  HY---DYEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAP-SGSLYLW 112
                D E             L+  + + P             +G+ C+++P +  +Y+ 
Sbjct: 92  EKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASESCDGIFCIHSPKTQDIYVV 151

Query: 113 NPATR 117
           NPATR
Sbjct: 152 NPATR 156


>AT5G22791.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Cyclin-like F-box (InterPro:IPR001810), F-box associated
           type 3 (InterPro:IPR013187), F-box associated type 1
           (InterPro:IPR017451); BEST Arabidopsis thaliana protein
           match is: F-box family protein (TAIR:AT1G30790.1). |
           chr5:7603579-7604771 REVERSE
          Length = 355

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC--HYD 59
           N+  D+  +I+SR+P K ++RF+ V + W S   + NF    L RS +   L F   H+D
Sbjct: 21  NIPFDLTLEIVSRLPAKPIIRFQAVSKLWFSTIRSKNFTDSFLTRSKTRPRLFFTFKHFD 80

Query: 60  YEXX---XXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSGSLYLWNPAT 116
                              T V  H  ++ + + I     NGL C Y    S+ + NP T
Sbjct: 81  SRKRFIFSAPERDNNDKSSTVVARHDMTISDVAYIRSLPVNGLFC-YTRGDSIAVCNPTT 139

Query: 117 REYI 120
           R+ +
Sbjct: 140 RQIV 143


>AT2G41473.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Cyclin-like F-box
          (InterPro:IPR001810); BEST Arabidopsis thaliana protein
          match is: F-box family protein (TAIR:AT3G17710.1). |
          chr2:17294453-17294728 REVERSE
          Length = 91

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 6  DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDY 60
          D+V +IL+++PVK L+RF+CV +SW SLF++  FI  H   + S   L  C   Y
Sbjct: 7  DLVIEILAKVPVKYLLRFRCVCKSWRSLFQDERFIRMHTTHAPSMFLLSACWPRY 61


>AT2G16450.1 | Symbols:  | F-box family protein |
          chr2:7131520-7132803 REVERSE
          Length = 427

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 6  DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC 56
          D++ +ILSR+P KS+ RF CV + W S+F +P F    L RS++   L+F 
Sbjct: 9  DLILEILSRLPAKSVRRFHCVSKRWASIFGSPYFKELFLTRSSTKPRLLFA 59


>AT2G15640.1 | Symbols:  | F-box family protein |
          chr2:6816792-6818072 REVERSE
          Length = 426

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 2  NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC 56
           +  D+  +ILSR+P KS+ RF CV + W S+F +P F    L RS++   L+F 
Sbjct: 5  TITNDLTVEILSRLPAKSVARFHCVSKQWGSIFGSPYFKELFLTRSSTKPRLLFA 59


>AT2G23160.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s:
          Cyclin-like F-box (InterPro:IPR001810), F-box
          associated type 3 (InterPro:IPR013187), F-box
          associated type 1 (InterPro:IPR017451); BEST
          Arabidopsis thaliana protein match is: F-box family
          protein (TAIR:AT2G16450.1); Has 750 Blast hits to 732
          proteins in 29 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 750; Viruses - 0;
          Other Eukaryotes - 0 (source: NCBI BLink). |
          chr2:9862470-9863393 FORWARD
          Length = 307

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 6  DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFC 56
          D++ +ILSR+P KS+ RF+CV + W S+   P F    L RS+    ++F 
Sbjct: 10 DLIAEILSRVPSKSVARFRCVSKPWASMIRRPYFTELFLTRSSPKPCILFA 60


>AT3G17570.1 | Symbols:  | F-box family protein |
           chr3:6009413-6010558 FORWARD
          Length = 381

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYE 61
           +L  D+  +ILSR+P  SL + K   + W +LF++P F+ +H+ R+      +     Y 
Sbjct: 4   DLPRDLETEILSRVPATSLQKLKPTCKRWYTLFKDPEFLKKHVGRAEREVISLMSLRVYS 63

Query: 62  XXXXXXXXXXXXXLTPVI--LHKPSVLEGSDILGSCNNGLVCLYAPSGSLYLWNPATRE 118
                        +T ++  L     ++ SDI   CN  L+C    S  L +WNP T E
Sbjct: 64  LSVNLSGIHSSVEMTGMLNSLKDSEDVKISDIT-ECNGLLLCTTDDS-RLVVWNPYTGE 120


>AT3G17280.1 | Symbols:  | F-box family protein |
           chr3:5903453-5904613 REVERSE
          Length = 386

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYE 61
           +L  D++ +ILSR+P KS+ + K   + W +LF++P F+ + L ++A     +  H    
Sbjct: 6   DLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNHEVNS 65

Query: 62  XXXXXXXXXXXXXLTPVILHKPSVLEGSDI----LGSCNNGLVCLYAPSGSLYLWNPAT 116
                        ++       ++ EGSD+    +  CN   +C    +  L +WNP T
Sbjct: 66  ISVDIHGIPKGYSVSMDFTGTLTIPEGSDLEIFRIHHCNGLFLCATM-NCRLVVWNPCT 123


>AT4G38870.1 | Symbols:  | F-box family protein |
           chr4:18132583-18133863 REVERSE
          Length = 426

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 6   DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRS------------ASSKTL 53
           D++ +IL ++ +K L+RF CV + W S+  +P F+   LN S            A S   
Sbjct: 56  DLIMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVFRAQSLGS 115

Query: 54  IFCHYDYEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSGSLYLWN 113
           IF     +              + +  H     +    +    +GL+C Y P  SL ++N
Sbjct: 116 IFSSVHLKSTREISSSSSSSSASSITYHVTCYTQQRMTISPSVHGLIC-YGPPSSLVIYN 174

Query: 114 PATREYIN 121
           P TR  I 
Sbjct: 175 PCTRRSIT 182