Jatropha Genome Database

JcCA0302101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302101.20 + phase: 0 /partial
         (246 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14 | UBP14 (UBIQUITIN-S...   424   e-119

>AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14 | UBP14
           (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific
           protease | chr3:7203001-7208340 REVERSE
          Length = 797

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 192/239 (80%), Positives = 220/239 (92%)

Query: 1   MELLRSNLSRVRIPEPTNRIYKDECCISFDTPRSEGGLYVDMNTFLAFGKDSVGWNYEKT 60
           MELLRSNLSRV+IPEPT+RIYK ECCISFDTPRSEGGL+VDMN+FLAFGKD V WNYEKT
Sbjct: 1   MELLRSNLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKT 60

Query: 61  GDAVYLHIKQTRKLVPEDRPSKKPTLLAIGVEGGFDNNEPEYEEIYSIVILPDYVTFPFP 120
           G+ VYLHIKQTRK +PEDRP KKPTLLAIGV+GGFDNNEPEYEE YSIVILPD+V+ PFP
Sbjct: 61  GNPVYLHIKQTRKSIPEDRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPFP 120

Query: 121 SVDLPEKVRLAVDAILMAESAERKEQLAAWTADKKQISAYAMNLPQIDNGVIVPPSGWKC 180
           SV+LPEKVR+AVD ++ A  AERKEQ+AAWTA+KK IS +A+ L QI +G+++PPSGWKC
Sbjct: 121 SVELPEKVRIAVDTVVNAVGAERKEQVAAWTAEKKLISEHALTLQQIKSGIVIPPSGWKC 180

Query: 181 AKCEKRENLWLNLSDGTILCGRRNWDGSGGNNHAIEHYKETSYPLAVKLGTITADLEAA 239
           +KC+K ENLWLNL+DG ILCGR+NWDG+GGNNHA+EHYKET+YPLAVKLGTITADLEAA
Sbjct: 181 SKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239