Jatropha Genome Database

JcCA0302081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302081.10 + phase: 1 /partial
         (54 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62300.2 | Symbols:  | 40S ribosomal protein S20 (RPS20C) | c...   110   2e-25
AT5G62300.1 | Symbols:  | 40S ribosomal protein S20 (RPS20C) | c...   110   2e-25
AT3G45030.1 | Symbols:  | 40S ribosomal protein S20 (RPS20A) | c...   110   2e-25
AT3G47370.3 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...   110   2e-25
AT3G47370.1 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...   110   2e-25
AT3G47370.2 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...   110   2e-25

>AT5G62300.2 | Symbols:  | 40S ribosomal protein S20 (RPS20C) |
           chr5:25021388-25022235 REVERSE
          Length = 124

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 71  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>AT5G62300.1 | Symbols:  | 40S ribosomal protein S20 (RPS20C) |
           chr5:25021388-25022235 REVERSE
          Length = 124

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 71  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>AT3G45030.1 | Symbols:  | 40S ribosomal protein S20 (RPS20A) |
           chr3:16471606-16472312 REVERSE
          Length = 124

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 71  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>AT3G47370.3 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
           chr3:17453671-17454437 REVERSE
          Length = 122

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 69  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>AT3G47370.1 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
           chr3:17453671-17454437 REVERSE
          Length = 122

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 69  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>AT3G47370.2 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
           chr3:17453671-17454437 REVERSE
          Length = 122

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RK+PCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIADS
Sbjct: 69  RKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122