Jatropha Genome Database

JcCA0301151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.20 + phase: 0 /partial
         (247 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    64   1e-10

>AT1G64570.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Homeodomain-like
           (InterPro:IPR009057); Has 1675 Blast hits to 1424
           proteins in 225 species: Archae - 2; Bacteria - 192;
           Metazoa - 559; Fungi - 257; Plants - 67; Viruses - 46;
           Other Eukaryotes - 552 (source: NCBI BLink). |
           chr1:23978868-23983925 FORWARD
          Length = 1239

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 49  FNPFLKGTXXXXXXXXXXXXVEGLDGN-----SSKPTTGEVRNYAVGDSEHGEEVVMRTA 103
           FNPFLK +            VE LDG      ++ P T E R       +  E++ M + 
Sbjct: 46  FNPFLKDSPSREASSSLSSEVETLDGEIVNSITTVPQTLEGR-------QGKEDIAMPS- 97

Query: 104 FSSESEKETQSSIHRRSKRKSDFVSQLENVSVRQKENSFSKPSMNLDDEDAIWKRTRARY 163
            +  S +E      R     ++   QL  V   QK++      M+ +++DAI KRTRARY
Sbjct: 98  -NDVSCQEPPIPDERTVGAANENGEQL--VIQTQKQD-----LMSTEEDDAICKRTRARY 149

Query: 164 SLASFTLDELETFLQXXXXXXXXXXXXXXXXYRKFLAAVLQ 204
           SLASFTLD+LE FLQ                YRKFLAAVL 
Sbjct: 150 SLASFTLDDLEAFLQETDDEDDIPNVDDEEEYRKFLAAVLH 190