Jatropha Genome Database

JcCA0301151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.10 - phase: 0 
         (423 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch...   306   2e-83

>AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch
           synthase/ transferase, transferring glycosyl groups |
           chr1:3952511-3956840 FORWARD
          Length = 1025

 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/415 (41%), Positives = 235/415 (56%), Gaps = 55/415 (13%)

Query: 2   SKPKGHAQKGFVPKVPAGTSTQKADSKKNGDKEGSITRTSSEILESKKKTLESEAHIEEE 61
           S PK    +GF  +   G S QK   KKNG+K+ + T T+                    
Sbjct: 4   SGPKSSGPRGFGRRTTVG-SAQKRTQKKNGEKDSNATSTA-------------------- 42

Query: 62  QTFQRIEDKTVNKEKLTGEASSTSEKVSVAKIDQAEQNGNAASVENITVPTDEISIVEKQ 121
                           T E S  S K+  AK+D  +Q+         +V  +E +++++ 
Sbjct: 43  ----------------TNEVSGIS-KLPAAKVDVQKQS---------SVVLNERNVLDRS 76

Query: 122 FDNLKSDTIVKEESTDVNEKTNENALRLEMEENQQKQEIEGLAEDNITMGNKFFVYPQAV 181
             +++  +   ++ T  ++   E  L+LE  EN +++EIE LA +N+  G++ FVYP  V
Sbjct: 77  --DIEDGSDRLDKKTTDDDDLLEQKLKLE-RENLRRKEIETLAAENLARGDRMFVYPVIV 133

Query: 182 KPDQDIELYLNRSLSTLNNEPDVFIMGAFNDWRWKSFTMKLNKTHLKGDWWSCQIHVPKE 241
           KPD+DIE++LNR+LSTLNNEPDV IMGAFN+WRWKSFT +L KT +  DW SC +H+PKE
Sbjct: 134 KPDEDIEVFLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIPKE 193

Query: 242 AYKMDFVFFNGKNVYDNNDKKDFCIPVEGGMDALAFEDFXXXXXXXXXXXXXXXXXXXXX 301
           AYKMDFVFFNG++VYDNND KDFC+ ++GGMD + FE+F                     
Sbjct: 194 AYKMDFVFFNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLEEKLREQEKLAKEEAERER 253

Query: 302 XXXXXXXXXXXXXXXXXXXXXXKVETEKRREILHRLIKSAARSVDNVWYIEPSEFKGEDL 361
                                 K ET+KRRE+L   IK A  S +NVWYIEPS+FK ED 
Sbjct: 254 QKEEKRRIEAQKAAIEADRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDT 313

Query: 362 VCIYYNKSSGPLAQANELWIHGGYNNWNGGLTIVQKLVSSERKD-----GDWWYA 411
           V +YYNK SGPL  + ELW+HGG+NNW  GL+IV KLV++E KD     G+WW+A
Sbjct: 314 VKLYYNKRSGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFA 368



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 153 ENQQKQEI--EGLAEDNITMGNKFFVYPQAVKPDQDIELYLNRSLSTLNNEPDVFIMGAF 210
           E Q+++E+    + +  ++  N +++ P   K +  ++LY N+    L N  ++++ G F
Sbjct: 278 ETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDTVKLYYNKRSGPLTNSKELWLHGGF 337

Query: 211 NDW-RWKSFTMKLNKTHLK------GDWWSCQIHVPKEAYKMDFVFFNGKN----VYDNN 259
           N+W    S  +KL    LK      G+WW  ++ VP  A  +D+VF +G      +YDNN
Sbjct: 338 NNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDWVFADGPPKGAFLYDNN 397

Query: 260 DKKDF--CIPVEGGMDALAFEDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 317
             +DF   +P +   +    E+                                      
Sbjct: 398 GYQDFHALVPQKLPEELYWLEE---------------ENMIFRKLQEDRRLKEEVMRAKM 442

Query: 318 XXXXXXKVETEKRREILHRLIKSAARSVDNVWYIEPSEFKGEDLVCIYYNKSSGPLAQAN 377
                 K ET++R       +K    S  +V Y EP E +  + V + YN ++  L    
Sbjct: 443 EKTARLKAETKERT------LKKFLLSQKDVVYTEPLEIQAGNPVTVLYNPANTVLNGKP 496

Query: 378 ELWIHGGYNNWNGGL 392
           E+W  G +N W   L
Sbjct: 497 EVWFRGSFNRWTHRL 511



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 122 FDNLKSDTIVKEESTDVNEKTNENALRLEMEENQQKQEIEGLAEDNITMGNKFFVYPQAV 181
           F  L+ D  +KEE   V     E   RL+ E  ++  +   L++ ++      +  P  +
Sbjct: 424 FRKLQEDRRLKEE---VMRAKMEKTARLKAETKERTLKKFLLSQKDVV-----YTEPLEI 475

Query: 182 KPDQDIELYLNRSLSTLNNEPDVFIMGAFNDWRWKSFTMKLNKTHLKGDWWS---CQIHV 238
           +    + +  N + + LN +P+V+  G+FN W  +   +   K     D  S       V
Sbjct: 476 QAGNPVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKV 535

Query: 239 PKEAYKMDFVFFNGKN--VYDNNDKKDFCIPVEGGM 272
           P +AY MDFVF   ++  ++DN +  D+ +PV GG+
Sbjct: 536 PLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPVVGGI 571