Jatropha Genome Database

JcCA0300671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300671.10 - phase: 0 /partial
         (214 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07870.1 | Symbols:  | F-box family protein | chr3:2510871-25...   187   3e-48
AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    63   1e-10
AT4G12560.2 | Symbols:  | F-box family protein | chr4:7441815-74...    59   2e-09
AT4G12560.1 | Symbols:  | F-box family protein | chr4:7441815-74...    59   2e-09

>AT3G07870.1 | Symbols:  | F-box family protein |
           chr3:2510871-2512124 FORWARD
          Length = 417

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/212 (49%), Positives = 135/212 (63%), Gaps = 11/212 (5%)

Query: 14  ESEVQVLTLG----NGSLNWRIKGKTSYQLLGMSSGVLVNGRLHWLTCRHRYQSLRTLIS 69
           +SEVQ+LTL     + SL+WR  GK  Y+ +  SS  LVNGRLH++T   R+   R  +S
Sbjct: 205 QSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVS 264

Query: 70  FDLEDEKFREVPVPSRESFGRHCSRLVILKGCLSAVNQG-FRSLYIWVMKEYGVKESWIK 128
           FDLEDE+F+E+P P      R   RLV LKGCL AV  G +  L IWVMK YGVKESW K
Sbjct: 265 FDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGK 324

Query: 129 EFSIGASIPRDLYYHPEQSI------QNFSQARVLCVLSNGEILLQYYCRSLVSYEPNSG 182
           E+SIG  +P+ L  + ++ +      +N    RVLC+L NGEILL+Y  R LV+Y+P  G
Sbjct: 325 EYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPKLG 384

Query: 183 TFKELGIRCLPESFNAVVHIASLNWIDTPVDL 214
            FK+L    LP  F+ VVH  +L+W DTP+DL
Sbjct: 385 KFKDLLFHGLPNWFHTVVHAGTLSWFDTPLDL 416


>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD
          Length = 427

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 25/170 (14%)

Query: 43  SSGVLVNGRLHWLTCRHRYQSLRTLISFDLEDEKFREVPVPSR-ESFGRHCSRLVI--LK 99
           +SGV  NG +HW+    R+   R +++FD++ E+FRE+PVP   E      S  V+  L 
Sbjct: 266 TSGVHFNGAIHWVFTESRHNQ-RVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLN 324

Query: 100 GCLSAVNQGFR-SLYIWVMKEYGVKESWIKEFSIGASIPRDLYYHPEQSIQNFSQARVLC 158
           G L  VN  +     IWVM EYG  +SW       + I  +L Y            + LC
Sbjct: 325 GRLCVVNSCYDVHDDIWVMSEYGEAKSW-------SRIRINLLYR---------SMKPLC 368

Query: 159 VLSNGEILLQYYCRSLVSYEPNSGTFKELGIRC---LPESFNAVVHIASL 205
              N E +L      LV Y   +     LGI C   L + F A  ++ SL
Sbjct: 369 STKNDEEVLLELDGDLVLYNFETNASSNLGI-CGVKLSDGFEANTYVESL 417


>AT4G12560.2 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 15/166 (9%)

Query: 45  GVLVNGRLHW-LTCRHRYQSLRTLISFDLEDEKFREVPVPSRESFGRHCSRLVI--LKGC 101
           GVL    LHW L  R    +   ++ FDL  E+F  V  P   + G    ++ I  L GC
Sbjct: 212 GVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271

Query: 102 LSAV-NQGFRSLYIWVMKEYGVKESWIKEFSIGASIPRDLYYHPEQSIQNFSQARVLCVL 160
           L  + N     + +W+MKEY V++SW K F++             +S+++FS  R L   
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV----------QKPKSVKSFSYMRPLVYS 321

Query: 161 SN-GEILLQYYCRSLVSYEPNSGTFKELGIRCLPESFNAVVHIASL 205
            +  ++LL+     LV ++  S     L I+  P S++A + ++SL
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSL 367


>AT4G12560.1 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 15/166 (9%)

Query: 45  GVLVNGRLHW-LTCRHRYQSLRTLISFDLEDEKFREVPVPSRESFGRHCSRLVI--LKGC 101
           GVL    LHW L  R    +   ++ FDL  E+F  V  P   + G    ++ I  L GC
Sbjct: 212 GVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271

Query: 102 LSAV-NQGFRSLYIWVMKEYGVKESWIKEFSIGASIPRDLYYHPEQSIQNFSQARVLCVL 160
           L  + N     + +W+MKEY V++SW K F++             +S+++FS  R L   
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV----------QKPKSVKSFSYMRPLVYS 321

Query: 161 SN-GEILLQYYCRSLVSYEPNSGTFKELGIRCLPESFNAVVHIASL 205
            +  ++LL+     LV ++  S     L I+  P S++A + ++SL
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSL 367