Jatropha Genome Database

JcCA0300071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300071.10 - phase: 0 
         (321 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase, tr...   168   4e-42
AT5G65685.1 | Symbols:  | soluble glycogen synthase-related | ch...   129   3e-30
AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch...   125   5e-29
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SA...    69   3e-12
AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2); transf...    67   1e-11

>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase,
           transferring glycosyl groups | chr4:10082221-10087044
           FORWARD
          Length = 1040

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 10/227 (4%)

Query: 99  SNPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDL-A 157
           S+ + ++H+ AEMAP+AKVGGLGDVV GL +A   +GH V I+LP Y+C+Q  ++ DL A
Sbjct: 539 SSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRA 598

Query: 158 LVTTYNSYHDGNWVPTNAYRGVVSDIPVIFIE---PSNEFFKGQQVYGGSYNELEAYLFF 214
           L T   SY DG       + G V  +PV FIE   PS  F++GQ  + G  ++   + +F
Sbjct: 599 LDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQ--FYGEQDDFRRFSYF 656

Query: 215 SRACLEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECR 274
           SRA LE +  +  +PDIIH H+WQT  +  LYWD+Y    L + R+  T HN E+ G   
Sbjct: 657 SRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTAS 716

Query: 275 KEQLSKSGLDGSIYATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
             +L   GLD +     ++ + D + G   +R++ +KG I++SN V 
Sbjct: 717 ASELGSCGLDVNQLNRPDR-MQDHSSG---DRVNPVKGAIIFSNIVT 759


>AT5G65685.1 | Symbols:  | soluble glycogen synthase-related |
           chr5:26273252-26275864 REVERSE
          Length = 460

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 100 NPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALV 159
           N +++IH+  EMAP+  VG L   +TGL+ A    G+ V ++LP Y  +   +I  L  +
Sbjct: 189 NGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREI 248

Query: 160 TT-YNSYHDGNWVPTNAYRGVVSDIPVIFIEPS--NEFFKGQQVYGGSYNELEAYLFFSR 216
                SY DG       + GVVS I V  I+P   +  F   +VYG   ++ + + +FSR
Sbjct: 249 EADAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQ-DDFDRFAYFSR 307

Query: 217 ACLEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKE 276
           A L+++  +  QPD++H+H WQT  +  L+WD++    L+  R++LT  + +  G    E
Sbjct: 308 ASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDK-GLVPPE 366

Query: 277 QLSKSGLDGSIYATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
           +L   GLD +    +++  D+     NP  +++LKGG+VYSN VV
Sbjct: 367 KLELCGLDPAELHRLDRLQDNT----NPHFVNILKGGVVYSNKVV 407


>AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch
           synthase/ transferase, transferring glycosyl groups |
           chr1:3952511-3956840 FORWARD
          Length = 1025

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 101 PMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVT 160
           P++I+H+  EMAPIAKVGGLGDVVT L+RA     H V I+ P Y+CI+   + DL    
Sbjct: 576 PLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYDCIKHNFVKDLQF-- 633

Query: 161 TYNSYHDGNWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRACLE 220
              SYH G       + G V  + V F++P N  F+   VYG + ++   + FF  A LE
Sbjct: 634 -NRSYHWGG-TEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCA-DDAGRFGFFCHAALE 690

Query: 221 WMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNME 268
           ++      PDI+H H+W +  +  L+ D Y    L   R+V TIHN+E
Sbjct: 691 FLLQGGFHPDILHCHDWSSAPVSWLFKDHYTQYGLIKTRIVFTIHNLE 738


>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF
           SALICYLIC ACID INSENSITIVITY 1); starch synthase/
           transferase, transferring glycosyl groups |
           chr5:8266934-8270860 FORWARD
          Length = 652

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 24/239 (10%)

Query: 103 NIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFY---ECIQKQ--QISDLA 157
           N++ VT+E AP +K GGLGDV   L  A   RGH V ++ P Y       K   +  DL 
Sbjct: 143 NLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLG 202

Query: 158 LVTTYNSYHDGNWVPTNAYRGVVSDIPVIFIE------PSNEFFKGQQVYGGSYNELEAY 211
           +  T N +  G     + Y      +  +F++      P N +   +  +G   N+    
Sbjct: 203 IRVTVNCF--GGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNPYGDSKGAFGD--NQFRFT 258

Query: 212 LFFSRAC-----LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYH-YLSLKNPRVVLTIH 265
           L    AC     L     T  +  +  V++W  G +P+L    Y  Y   K+ R +L IH
Sbjct: 259 LLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIH 318

Query: 266 NMEHYGECRKEQLSKSGLDGSIYATVEKAVDDRTIGH---NPERLSLLKGGIVYSNAVV 321
           N+ H G       +  GL    Y  V          H     E +++LKG IV S+ ++
Sbjct: 319 NLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRII 377


>AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2);
           transferase, transferring glycosyl groups |
           chr3:62456-65678 REVERSE
          Length = 792

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 99  SNPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLAL 158
           +N MN+I V AE AP +K GGLGDV   L ++   RGH V +++P Y   +  +  DL +
Sbjct: 298 ANVMNVILVAAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRY--AEYAEAKDLGV 355

Query: 159 VTTYNSYHDGNWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGS-YNELEAYLFFSRA 217
              Y     G  +    +   +  +  +FI+          +YGG+  + L+  + F +A
Sbjct: 356 RKRYKVA--GQDMEVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMVLFCKA 413

Query: 218 CLE--WM----QVTEIQPDIIHV-HEWQTGGLPLLYWDMYH--YLSLKNPRVVLTIHNME 268
            +E  W      V     ++  + ++W T  LP +Y   Y+  +  +K  R VL IHN+ 
Sbjct: 414 AVEVPWYVPCGGVCYGDGNLAFIANDWHTALLP-VYLKAYYRDHGIMKYTRSVLVIHNIA 472

Query: 269 HYG 271
           H G
Sbjct: 473 HQG 475