Jatropha Genome Database
- JcCA0299871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0299871.10 - phase: 0 /partial
(278 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47450.2 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | NOA1 (... 388 e-108
AT3G47450.1 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | NOA1 (... 386 e-107
AT3G57180.1 | Symbols: | GTP binding | chr3:21163663-21166006 R... 82 5e-16
AT4G10620.1 | Symbols: | INVOLVED IN: biological_process unknow... 73 2e-13
>AT3G47450.2 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | NOA1 (NO
ASSOCIATED 1); GTPase/ nitric-oxide synthase |
chr3:17483195-17486249 REVERSE
Length = 561
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 223/278 (80%), Gaps = 2/278 (0%)
Query: 1 GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGGGKIFDT 60
G+ANVGKSAFINA LK MA+RDP +KYKP+QSAVPGTTLGPIQI+AF+GG K++DT
Sbjct: 286 GAANVGKSAFINALLKTMAERDPVAAAAQKYKPIQSAVPGTTLGPIQINAFVGGEKLYDT 345
Query: 61 PGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFWG 120
PGVHLHHRQAAVVHS+DLP LAP++RLRGQSF + L +++ + K ES LNG++ FWG
Sbjct: 346 PGVHLHHRQAAVVHSDDLPALAPQNRLRGQSFDISTLPTQSSSSPKGES--LNGYTFFWG 403
Query: 121 GLVRIDILKVLPETSLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDWKG 180
GLVRIDILK LPET TFYGPKAL+IH VPT A FY +ELGVLLTPP+GK + ++WKG
Sbjct: 404 GLVRIDILKALPETCFTFYGPKALEIHAVPTKTATAFYEKELGVLLTPPSGKNQMQEWKG 463
Query: 181 LEIVRQLQIKFEDAERPASDIAISGLGWIAIEPASKSLRRPDMNLGEIAKELHLAVHVPK 240
L+ R LQI+ DA+RPASD+AISGLGWI+IEP K+ +L E E+H+ V VPK
Sbjct: 464 LQSHRLLQIEINDAKRPASDVAISGLGWISIEPIRKTRGTEPRDLNEAEHEIHICVSVPK 523
Query: 241 PVEIFVRPPLPVGKYGAEWYQYRELTEKEEELRPRWNF 278
PVE+F+RP LP+G G EWYQYRELT+KEEE+RP+W F
Sbjct: 524 PVEVFLRPTLPIGTSGTEWYQYRELTDKEEEVRPKWYF 561
>AT3G47450.1 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | NOA1 (NO
ASSOCIATED 1); GTPase/ nitric-oxide synthase |
chr3:17483195-17486249 REVERSE
Length = 561
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/278 (65%), Positives = 222/278 (79%), Gaps = 2/278 (0%)
Query: 1 GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGGGKIFDT 60
G+ANVGKSAFINA LK MA+RDP +KYKP+QSAVPGTTLGPIQI+AF+GG K++DT
Sbjct: 286 GAANVGKSAFINALLKTMAERDPVAAAAQKYKPIQSAVPGTTLGPIQINAFVGGEKLYDT 345
Query: 61 PGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFWG 120
PGVHLHHRQAAVVHS+DLP LAP++RLRGQSF + L +++ + K ES LNG++ FWG
Sbjct: 346 PGVHLHHRQAAVVHSDDLPALAPQNRLRGQSFDISTLPTQSSSSPKGES--LNGYTFFWG 403
Query: 121 GLVRIDILKVLPETSLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDWKG 180
GLVRIDILK LPET TFYGPKAL+IH VPT A FY +LGVLLTPP+GK + ++WKG
Sbjct: 404 GLVRIDILKALPETCFTFYGPKALEIHAVPTKTATAFYEAKLGVLLTPPSGKNQMQEWKG 463
Query: 181 LEIVRQLQIKFEDAERPASDIAISGLGWIAIEPASKSLRRPDMNLGEIAKELHLAVHVPK 240
L+ R LQI+ DA+RPASD+AISGLGWI+IEP K+ +L E E+H+ V VPK
Sbjct: 464 LQSHRLLQIEINDAKRPASDVAISGLGWISIEPIRKTRGTEPRDLNEAEHEIHICVSVPK 523
Query: 241 PVEIFVRPPLPVGKYGAEWYQYRELTEKEEELRPRWNF 278
PVE+F+RP LP+G G EWYQYRELT+KEEE+RP+W F
Sbjct: 524 PVEVFLRPTLPIGTSGTEWYQYRELTDKEEEVRPKWYF 561
>AT3G57180.1 | Symbols: | GTP binding | chr3:21163663-21166006
REVERSE
Length = 644
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 28/213 (13%)
Query: 1 GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGG-GKIFD 59
G+ N GKS INA ++++D + + ++ VPGTTLG ++I L K++D
Sbjct: 383 GAQNAGKSTLINA----LSKKD----GAKVTRLTEAPVPGTTLGILKIGGILSAKAKMYD 434
Query: 60 TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
TPG+ + + ++SE+ ++ R ++ +S+ G S+
Sbjct: 435 TPGLLHPYLMSLRLNSEERKMVEIRKEVQPRSYRVKA-----------------GQSVHI 477
Query: 120 GGLVRIDILKVLPET-SLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDW 178
GGLVR+D++ ET +T + ++ +H+ T+ A+E + G+ L PP G+ RA +
Sbjct: 478 GGLVRLDLVSASVETIYITIWASHSVSLHLGKTENAEEIFKGHSGLRLQPPIGENRASEL 537
Query: 179 KGLEIVRQLQIKFEDAERPASDIAISGLGWIAI 211
E +++Q+ + + DI+++GLGW+++
Sbjct: 538 GTWE-EKEIQVSGNSWDVKSIDISVAGLGWLSL 569
>AT4G10620.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: GTP binding
(TAIR:AT3G57180.1); Has 777 Blast hits to 699 proteins
in 334 species: Archae - 15; Bacteria - 397; Metazoa -
157; Fungi - 74; Plants - 61; Viruses - 0; Other
Eukaryotes - 73 (source: NCBI BLink). |
chr4:6564297-6566402 FORWARD
Length = 597
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 1 GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLG-GGKIFD 59
GS N GKS INA K++ + + ++ VPGTTLG I+I+ L K+FD
Sbjct: 320 GSQNAGKSTLINAVGKVVG--------GKVWHLTEAPVPGTTLGIIRIEGVLPFEAKLFD 371
Query: 60 TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
TPG+ H+ + E+ ++ L+ +++ + G+++
Sbjct: 372 TPGLLNPHQITTRLTREEQRLVHISKELKPRTYRIKE-----------------GYTVHI 414
Query: 120 GGLVRIDILKVLPET-SLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDW 178
GGL+R+DI + ++ +T + + +H+ + A + + G L PP G++R E+
Sbjct: 415 GGLMRLDIDEASVDSLYVTVWASPYVPLHMGKKENAYKTLEDHFGCRLQPPIGEKRVEEL 474
Query: 179 KGLEIVRQLQIKFEDAERPASDIAISGLGWIAI 211
G + ++ ++ + + DIA+SGLGW A+
Sbjct: 475 -GKWVRKEFRVSGTSWDTSSVDIAVSGLGWFAL 506