Jatropha Genome Database

JcCA0299231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299231.10 - phase: 0 /partial
         (565 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47980.1 | Symbols: SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COH...   731   0.0  

>AT2G47980.1 | Symbols: SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION
            PROTEIN 3); binding | chr2:19631423-19636795 FORWARD
          Length = 1098

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/551 (63%), Positives = 446/551 (80%), Gaps = 6/551 (1%)

Query: 1    DWKCIISILLDENPQV-ELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKE 59
            DWKCIIS+LLD+NP+    TD+D+TNL+RLLF S+RKAVGE+I+P++DNRKQY++KAQ+E
Sbjct: 473  DWKCIISMLLDQNPRTGSTTDEDSTNLIRLLFVSIRKAVGEKIIPSTDNRKQYHSKAQRE 532

Query: 60   IFENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQ 119
            IFENNR+DIT+AMMKN+P LLRKF ADKAKV SLVEII+ M LELYSLKRQEQ+FK  ++
Sbjct: 533  IFENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIIIFMKLELYSLKRQEQSFKAAVR 592

Query: 120  LIKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEAA 179
            LIK+AFFKHGEKEALRSCVKAITFC++ES+GEL+DF+  KLK+LEDEL+ K+ SA++E  
Sbjct: 593  LIKDAFFKHGEKEALRSCVKAITFCASESKGELQDFSRGKLKDLEDELLDKITSAIREVK 652

Query: 180  DG-DEYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVA 238
            DG DEYSLLVNLKRLYELQLS+ V +ES++D+I   LH FRN+D+EV+ FLLLNM++++A
Sbjct: 653  DGNDEYSLLVNLKRLYELQLSKPVLVESMFDEIALTLHNFRNLDEEVICFLLLNMHMYLA 712

Query: 239  WSLQSIVNSETVSEAQLSSLLSKRNVLFEELEYFLITPSNEERVSKYANQLACRVCIILA 298
            W L SI+N E +SEA LSSL+SKR+ LFEEL YFL   +  E   KY NQL+ R+C ILA
Sbjct: 713  WYLHSIINCEAISEASLSSLISKRDTLFEELSYFL---NGIEESKKYGNQLSNRICAILA 769

Query: 299  EAWCLFRQTNFSSTKLESLGYCPDTSVLQKFWRLSEQQLNISDETEDEDSNKEYIEETNR 358
            E WCLFR++N+ S KLE LGYCPD+  L+KFW+L  +  N SDET++ED NKEYIEETNR
Sbjct: 770  ETWCLFRKSNYDSGKLERLGYCPDSVFLEKFWKLCAEMFNTSDETDEEDENKEYIEETNR 829

Query: 359  DAVVIAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEIVKHLITVIKKKDDDTTNIFLE 418
            D  VIAA KLVAS  V K+YL PEIISH  MHG  +  I+K+LIT ++KK+DD +NI+LE
Sbjct: 830  DVSVIAACKLVASDVVPKDYLGPEIISHLGMHGPGVTGIIKNLITFLRKKEDDISNIYLE 889

Query: 419  ALKRAHHRHLEELSRS-DDGSVGKSFQECKDLAARLSATFMGAARNKHRADILKIVKEGI 477
            +LKRA+HR+  ELS   ++  V K  +E ++LA  LS  ++GAARNK+R +IL +VKEG+
Sbjct: 890  SLKRAYHRYSSELSSGREESRVDKCLEEWRELAGGLSGMYIGAARNKYRLEILSVVKEGV 949

Query: 478  EYAFIDSPKQLSFLEGAVLHFVSKLPTSDVLEILKDVQSRTENVNTDEDPSGWRPYHTFV 537
            E+AF D+PKQL FLE A+L F ++L  SD+++I KDVQ R  +VNTDEDPSGWRP  TF+
Sbjct: 950  EFAFRDAPKQLLFLEVAILPFATRLSVSDIIDIKKDVQGRIVHVNTDEDPSGWRPCFTFL 1009

Query: 538  DNLREKYAKND 548
            + L EK  KN+
Sbjct: 1010 ETLEEKCLKNE 1020