Jatropha Genome Database

JcCA0298491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0298491.10 + phase: 0 /TE/partial
         (575 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64260.1 | Symbols:  | zinc finger protein-related | chr1:238...   158   1e-38
AT1G64255.1 | Symbols:  | SWIM zinc finger family protein | chr1...   142   8e-34
AT1G49920.1 | Symbols:  | zinc finger protein-related | chr1:184...   141   9e-34

>AT1G64260.1 | Symbols:  | zinc finger protein-related |
           chr1:23847756-23849915 FORWARD
          Length = 719

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/537 (23%), Positives = 221/537 (41%), Gaps = 45/537 (8%)

Query: 1   DHTFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLP 60
           DH   +G  F D    + A+    I +     + +++   Y  +C    C W +RA ++ 
Sbjct: 182 DHDMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARME 241

Query: 61  NVPTFTIRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNINYKPKDILHDIHKQYG 120
                 I    G HTC        H+   D+   F  + +   +  +P   + ++ K + 
Sbjct: 242 EHGLVEITKYTGPHTCS-------HEYPNDFESEFAADEIERVVRIQPTLSIAELKKWWK 294

Query: 121 ITIPYK-QAWRAKERGLAAI---YGSSEEGYCLLPSYCEQIKRTNPGSIA---EVFTTGA 173
               Y+ Q  + ++  L  I   +G  ++ + ++P        +N   +    ++F    
Sbjct: 295 EKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPD 354

Query: 174 DNRFQRLFVSFYASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAFGV 233
              F+ +F SF  SI GF   C P+I +    L  KY   L++A+  DA    FP+AF V
Sbjct: 355 FASFRGVFWSFSQSIEGF-QHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAV 413

Query: 234 VDLENDESWMWFLSELQNALDMNTDNMPQFTFLSDGPKGIIDAVRR-----KFPSSSHAF 288
               + +SW WF ++++  +    D       +S   + I+  V       + P + H F
Sbjct: 414 TKEVSTDSWRWFFTKIREKVTQRKD----LCLISSPLRDIVAVVNEPGSLWQEPWAHHKF 469

Query: 289 CMRHLSDSIGKEFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWLQQFPPSQW 348
           C+ HL       F++  L  L+ +A        F   M +I E +  A KWL Q P  +W
Sbjct: 470 CLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKW 529

Query: 349 ALVYFEGTRYGHLSSNIEEFNRWILEA--RELPIIQVIERIHSKLIAEFEDRRLKSNSWF 406
           AL +  G RYG     I E +R  L A  R  P   V   +   ++  F++ R   +   
Sbjct: 530 ALAHDSGLRYG-----IIEIDREALFAVCRGFPYCTVA--MTGGVMLMFDELRSSFDKSL 582

Query: 407 SVLAPSAEKRMIEAINRASTYQVLRSDEVEFEVISAERSN------------IVNIGTHS 454
           S +  S  + ++         +   +D + + +   ER +            IV +   +
Sbjct: 583 SSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVST 642

Query: 455 CSCRDWQLHGIPCSHAVAAIISCRKDVYAFAEKCFTVSSYREAYAEVICPIPEKIGW 511
           C+CR +Q +  PC HA+A     + +   + ++C+TV  Y + YA    P+P+   W
Sbjct: 643 CTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAW 699


>AT1G64255.1 | Symbols:  | SWIM zinc finger family protein |
           chr1:23844954-23847206 FORWARD
          Length = 750

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 122/540 (22%), Positives = 213/540 (39%), Gaps = 35/540 (6%)

Query: 1   DHTFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLP 60
           DH   VG  F D    + A+   ++    +  + ++    Y  +C    C W + A ++ 
Sbjct: 189 DHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMK 248

Query: 61  NVPTFTIRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNINYKPKDILHDIHKQYG 120
                 I    G HTC       H     D+   F  + +   + Y P   + ++ K + 
Sbjct: 249 KHGLVEIIKYTGPHTC-------HPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWK 301

Query: 121 ITIPYK----QAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIA---EVFTTGA 173
             I Y+        AKE+ +  ++G  ++ +   P     +  +N   +    ++F    
Sbjct: 302 KKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPN 361

Query: 174 DNRFQRLFVSFYASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAFGV 233
              F  +F +F  SI GF + C P+I +    L  +Y   L++A+  DA    FP+AF V
Sbjct: 362 FASFCGVFWAFPQSIEGFQH-CRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAV 420

Query: 234 VDLENDESWMWFLSELQNALDMNTDNMPQFTFLSDGPKGIIDAVRR-----KFPSSSHAF 288
               + + W WFL+ ++  +            +S     II  V       + P + H F
Sbjct: 421 TKEVSTDIWRWFLTGIREKVTQRKG----LCLISSPHPDIIAVVNESGSQWQEPWAYHRF 476

Query: 289 CMRHLSDSIGKEFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWLQQFPPSQW 348
            + H      + F +  L   + +A   +    F   M +I E +  A KWL QFP ++W
Sbjct: 477 SLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRW 536

Query: 349 ALVYFEGTRYGHLSSNIEEFNRWILEARELP-------IIQVIERIHSKLIAEFEDRRLK 401
           AL +  G RYG +  N +     +  A E         ++ + + + SK    F   R  
Sbjct: 537 ALAHDNGRRYGIMEINTKALFA-VCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSS 595

Query: 402 SNSWFSVLAPSAEK-RMIEAINRASTYQVLRSDEVEFEVISA--ERSNIVNIGTHSCSCR 458
            N       P  +K           +Y V   D   F+V +A  +   IV +   SC+C 
Sbjct: 596 LNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCG 655

Query: 459 DWQLHGIPCSHAVAAIISCRKDVYAFAEKCFTVSSYREAYAEVICPIPEKIGWTKMGDTP 518
           D+Q +  PC HA+A     + +   + + C+T+   +  YA +   +PE   W +    P
Sbjct: 656 DFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEASGVP 715


>AT1G49920.1 | Symbols:  | zinc finger protein-related |
           chr1:18481798-18484233 REVERSE
          Length = 785

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 131/566 (23%), Positives = 227/566 (40%), Gaps = 72/566 (12%)

Query: 3   TFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNV 62
           T  VG  F D+   + A+   +I +  +  + +++   Y  +C    C W I A +    
Sbjct: 179 TMRVGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREED 238

Query: 63  PTFTIRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNINYKPKDILHDIHKQYGIT 122
             F I    G H C     N      + +    IE  +R        ++     K++G  
Sbjct: 239 GLFEITECSGPHDCYPEHLNDFDAECIPFQ---IERVVRVQPTLSTAELDKWWEKKFGFA 295

Query: 123 IPY-------KQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADN 175
           +              AK + +   +G  ++ + L+P     +  +N   +   + +   +
Sbjct: 296 LDQVVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMSVLHSSNGLLVDWQYDSLTHD 355

Query: 176 ----RFQRLFVSFYASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAF 231
                F+ LF +F  SI GF + C P+I +    L  KY   L++A++FDA    FP+AF
Sbjct: 356 PEHASFRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAF 414

Query: 232 GVVDLENDESWMWFLSELQNALDMNTDNMPQFTFLSDGPKGIIDAV------RRKFPSSS 285
            V    + +SW WFL+ ++  +        Q   L   P   I AV      + K P + 
Sbjct: 415 AVTKEVSVDSWRWFLTRIREKVTQR-----QGICLISSPDPDILAVINEPGSQWKEPWAY 469

Query: 286 HAFCMRHL-----SDSIGKEFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWL 340
           H FC+ HL     S S G ++    LV    +A  ++    F   M EI E +  A KWL
Sbjct: 470 HRFCLYHLCSKLCSVSPGFDYNMHFLVD---EAGSSSQKEEFDSYMKEIKERNPEAWKWL 526

Query: 341 QQFPPSQWALVYFEGTRYGHLSSNIEEFNRWILEARELPIIQVIERIHSKL--------- 391
            QFPP QWAL + +G RYG +  + E         R++ +   +  +  +L         
Sbjct: 527 DQFPPHQWALAHDDGRRYGIMRIDTEALFAVCKRFRKVAMAGGVMLLFGQLKDAFAESFK 586

Query: 392 ----------------IAEFEDRRLKSNSWFSVLAPSAEKRMIEAINRASTYQVLRSDEV 435
                           + + E+    S++W   + P         + R   YQV  + + 
Sbjct: 587 LSRGSLKHGDVYTEHVMEKLEEFETDSDTWVITITP---------LER-DAYQVSMAPKK 636

Query: 436 EFEVISAER---SNIVNIGTHSCSCRDWQLHGIPCSHAVAAIISCRKDVYAFAEKCFTVS 492
           +  ++       S IV +   +C+C ++Q +  PC HA+A     + +   + + C+TV 
Sbjct: 637 KTRLMGQSNDSTSGIVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVE 696

Query: 493 SYREAYAEVICPIPEKIGWTKMGDTP 518
            Y + Y+    P+PE   W +    P
Sbjct: 697 RYHKTYSAKFSPVPELSAWPEAYGVP 722