Jatropha Genome Database

JcCA0297911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.20 - phase: 1 /partial
         (346 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30010.1 | Symbols:  | intron maturase, type II family protei...   612   e-176
AT5G46920.1 | Symbols:  | intron maturase, type II family protei...   434   e-122

>AT1G30010.1 | Symbols:  | intron maturase, type II family protein |
           chr1:10513194-10515329 FORWARD
          Length = 711

 Score =  612 bits (1579), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 287/346 (82%), Positives = 316/346 (91%)

Query: 1   KLDSIWRDSIDDGCHNPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQIRKE 60
           K DSIW++SI+DGCHNP+WPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAV++RKE
Sbjct: 366 KDDSIWKESIEDGCHNPAWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVKMRKE 425

Query: 61  IIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERGVGT 120
           II+FCD   G+RLDNSK+EIEHI+RGIQFLDHIICRRVIYPTL YT SGG IVS++GVGT
Sbjct: 426 IIDFCDRVFGVRLDNSKLEIEHISRGIQFLDHIICRRVIYPTLRYTGSGGSIVSKKGVGT 485

Query: 121 LLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADWYRY 180
           LLSV+ASL+QCIRQFRRL FVKGDKDPEPLPCNPMLYSSQ+H+N+QMNKFLETMADWY+Y
Sbjct: 486 LLSVSASLEQCIRQFRRLAFVKGDKDPEPLPCNPMLYSSQSHSNSQMNKFLETMADWYKY 545

Query: 181 ADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPEYSD 240
           ADNRKK VGFCAYVIRSSLAKLYAARYRLKSRAKVY IASRDLS PL ESSNNSAPEYSD
Sbjct: 546 ADNRKKAVGFCAYVIRSSLAKLYAARYRLKSRAKVYSIASRDLSHPLSESSNNSAPEYSD 605

Query: 241 LLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELWRSI 300
           LLRMGLVDAIEGVQFS MSLIPSCDYTPFPRNWIP+HE+VL EYIRLQDPKFFC L RSI
Sbjct: 606 LLRMGLVDAIEGVQFSRMSLIPSCDYTPFPRNWIPNHEQVLQEYIRLQDPKFFCGLHRSI 665

Query: 301 KHQSLTLPQDEISEIVWDYKTLGIRRYQSSGEKEPNNASEKLDETS 346
           K + LTLPQDEISE VWD+KTLG  R +   ++E ++  +KLD  +
Sbjct: 666 KREGLTLPQDEISEAVWDFKTLGAWRSKYENKREADDGLQKLDSQT 711


>AT5G46920.1 | Symbols:  | intron maturase, type II family protein |
           chr5:19053668-19055875 FORWARD
          Length = 735

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 258/333 (77%), Gaps = 6/333 (1%)

Query: 1   KLDSIWRD---SIDDGCHNPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQI 57
           K D IW +     D G  N SWPEFVP+SG +KTRKMDY+RYGGH LIG+RGPR DA  +
Sbjct: 366 KSDVIWNNPEGEADQG--NTSWPEFVPTSGPDKTRKMDYVRYGGHILIGVRGPRADAATL 423

Query: 58  RKEIIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERG 117
           RKE+IEF D K  +RLDN  + IEHIT+GI FLDH++CRRV+YPTL YTA+GGKI+SE+G
Sbjct: 424 RKELIEFVDQKYMLRLDNENLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKG 483

Query: 118 VGTLLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADW 177
           VGTLLSVTASL+QCI+QFR+L F+KGD+DP+P PC  M +++QAHTN QMNKFL T+A+W
Sbjct: 484 VGTLLSVTASLKQCIKQFRKLLFIKGDRDPDPQPCFRMFHATQAHTNNQMNKFLTTIAEW 543

Query: 178 YRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPE 237
           YR+ADNRKK+V FC+Y+IR SLAKLYAA+Y+L+SRAKVYK A+R+LS PL +    S PE
Sbjct: 544 YRFADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKFANRNLSLPLLQKKGQS-PE 602

Query: 238 YSDLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELW 297
           Y +LLRMGL ++++G+ ++ MSL+P  DY+PFP NW P+HE+ L EY+ L +PK   E  
Sbjct: 603 YQNLLRMGLAESVDGLVYTRMSLVPETDYSPFPGNWRPEHEKFLIEYLTLDEPKTLEEQK 662

Query: 298 RSIKHQSLTLPQDEISEIVWDYKTLGIRRYQSS 330
           R I+ + L  PQD  S +VW+YK   I   Q S
Sbjct: 663 RFIREKGLVSPQDYTSMLVWNYKRNAIPMDQVS 695