Jatropha Genome Database

JcCA0297911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.10 - phase: 0 
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17080.1 | Symbols:  | unknown protein | chr1:5840458-5841536...    63   5e-11
AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN ...    57   2e-09
AT1G29970.3 | Symbols:  | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)...    57   2e-09
AT1G29970.1 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN ...    57   3e-09
AT1G53560.1 | Symbols:  | unknown protein | chr1:19984908-199859...    49   6e-07

>AT1G17080.1 | Symbols:  | unknown protein | chr1:5840458-5841536
           REVERSE
          Length = 154

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 3   EEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSI-AN 61
           EE K++G       Q   YGTFQGV+NY                       AP G   + 
Sbjct: 5   EEDKSKGFASEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPS-------APPGVYDSG 57

Query: 62  PQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
             Y+ HGY +      V EGRPVR+ RLPCCG+G+GWFL
Sbjct: 58  APYYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFL 96


>AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN
           L18A-1); structural constituent of ribosome |
           chr1:10498458-10501311 REVERSE
          Length = 312

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXX----XXXXIAPH 56
           M EE      +        YYGTFQGVAN+                          +  H
Sbjct: 1   MDEEAAKPRDSTVNQQHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGH 60

Query: 57  GSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           G   N   +  G+      Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 61  GGGVN---YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFL 101


>AT1G29970.3 | Symbols:  | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
           chr1:10499952-10501311 REVERSE
          Length = 200

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXX----XXXXIAPH 56
           M EE      +        YYGTFQGVAN+                          +  H
Sbjct: 1   MDEEAAKPRDSTVNQQHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGH 60

Query: 57  GSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           G   N   +  G+      Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 61  GGGVN---YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFL 101


>AT1G29970.1 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN
           L18A-1) | chr1:10499952-10501311 REVERSE
          Length = 158

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXX----XXXXIAPH 56
           M EE      +        YYGTFQGVAN+                          +  H
Sbjct: 1   MDEEAAKPRDSTVNQQHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGH 60

Query: 57  GSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           G   N   +  G+      Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 61  GGGVN---YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFL 101


>AT1G53560.1 | Symbols:  | unknown protein | chr1:19984908-19985960
           REVERSE
          Length = 153

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 73  ATGYAVIEGRPVREHRLPCCGLGMGWFL 100
             GY V +GRP R++RLPCCGLG+GWFL
Sbjct: 68  VAGYPVSQGRPARQNRLPCCGLGLGWFL 95