Jatropha Genome Database

JcCA0297821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297821.20 - phase: 0 /partial
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20810.2 | Symbols:  | transcription factor jumonji (jmjC) do...   138   8e-34
AT3G20810.1 | Symbols:  | transcription factor jumonji (jmjC) do...   138   8e-34
AT3G20810.3 | Symbols:  | transcription factor jumonji (jmjC) do...   133   3e-32

>AT3G20810.2 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278144 FORWARD
          Length = 429

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 69/75 (92%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLYP+ L +ELYPYSETML NSSQVDLDN+DE EFPK  +LEF+DCILEEGEM
Sbjct: 337 VVGKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEEGEM 396

Query: 61  LYIPPKWWHYVRSLT 75
           LYIPPKWWHYVRSLT
Sbjct: 397 LYIPPKWWHYVRSLT 411


>AT3G20810.1 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278144 FORWARD
          Length = 418

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 69/75 (92%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLYP+ L +ELYPYSETML NSSQVDLDN+DE EFPK  +LEF+DCILEEGEM
Sbjct: 326 VVGKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEEGEM 385

Query: 61  LYIPPKWWHYVRSLT 75
           LYIPPKWWHYVRSLT
Sbjct: 386 LYIPPKWWHYVRSLT 400


>AT3G20810.3 | Symbols:  | transcription factor jumonji (jmjC)
           domain-containing protein | chr3:7275814-7278182 FORWARD
          Length = 398

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLYP+ L +ELYPYSETML NSSQVDLDN+DE EFPK  +LEF+DCILEEGEM
Sbjct: 326 VVGKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEEGEM 385

Query: 61  LYIPPKWWHYVR 72
           LYIPPKWWHYVR
Sbjct: 386 LYIPPKWWHYVR 397