Jatropha Genome Database

JcCA0297521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297521.10 + phase: 0 /partial
         (342 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID D...   348   3e-96
AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5 (NINE-CIS-EPOXYCAR...   181   6e-46
AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAR...   177   1e-44
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-...   174   9e-44
AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9 (NINE-CIS-EPOXYCAR...   165   5e-41
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CARO...   164   7e-41
AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6 (NINE-CIS-EPOXYCAR...   145   2e-35

>AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID
           DIOXYGENASE 4) | chr4:10481835-10483622 FORWARD
          Length = 595

 Score =  348 bits (893), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 189/238 (79%), Gaps = 1/238 (0%)

Query: 106 KRRVEPSLPTMVFNAFDGIINNFIDPPLKPGVDPGHVLSDNFAPV-DELPPTDCEVIEGS 164
           K R E +L T +F   + +IN FIDPP +P VDP HVLSDNFAPV DELPPTDCE+I G+
Sbjct: 74  KLRPEMTLATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGT 133

Query: 165 LPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGMLHSIRISQGKAKLCSRYVKTYKYIKERD 224
           LP  L+GAYIRNGPNPQ+LP+GPYHLFDGDGMLH+I+I  GKA LCSRYVKTYKY  E+ 
Sbjct: 134 LPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQ 193

Query: 225 AGAPLLPNVFSGFNXXXXXXXXXXXXXXXILSGQFNPANGIGLANTSLAFFGNRLYALGE 284
            GAP++PNVFSGFN               +L+GQ+NP NGIGLANTSLAFF NRL+ALGE
Sbjct: 194 TGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGE 253

Query: 285 SDLPYVVRLTPNGDIETVGRHDFDGKLFFSMTAHPKIDLETGETFAFRYAPIPPFLTY 342
           SDLPY VRLT +GDIET+GR+DFDGKL  SMTAHPK D  TGETFAFRY P+PPFLTY
Sbjct: 254 SDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTY 311


>AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5
           (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5);
           9-cis-epoxycarotenoid dioxygenase |
           chr1:10571383-10573152 FORWARD
          Length = 589

 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 124/212 (58%), Gaps = 2/212 (0%)

Query: 132 PLKPGVDPGHVLSDNFAPVDELPPTDCEVIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLF 191
           PL   VDP H +S N+APV E        ++G +P C+DG Y+RNG NP + P   +HLF
Sbjct: 102 PLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLF 161

Query: 192 DGDGMLHSIRISQGKAKLCSRYVKTYKYIKERDAGAPLLPNVFSGFNXXXXXXXXXXXXX 251
           DGDGM+H+++I+ G A    R+ +T + ++E+  G+P+ P      +             
Sbjct: 162 DGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYA 221

Query: 252 XXILSGQFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETVGRHDFDGKL 311
             +  G  N  NG G+AN  L +F +RL A+ E DLPY VR+T NGD+ET+GR DFDG+L
Sbjct: 222 RGLF-GLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQL 280

Query: 312 FFSMTAHPKIDLETGETFAFRYAPI-PPFLTY 342
             +M AHPKID  T E FA  Y  +  P+L Y
Sbjct: 281 SSAMIAHPKIDPVTKELFALSYDVVKKPYLKY 312


>AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2
           (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2);
           9-cis-epoxycarotenoid dioxygenase |
           chr4:10142672-10144423 FORWARD
          Length = 583

 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 2/221 (0%)

Query: 123 GIINNFIDPPLKPGVDPGHVLSDNFAPVDELPPTDCEVIEGSLPSCLDGAYIRNGPNPQY 182
            +I++  D PL    DP   ++ N++PV E        +EG++P C+DG YIRNG NP +
Sbjct: 86  ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMF 145

Query: 183 LPKGPYHLFDGDGMLHSIRISQGKAKLCSRYVKTYKYIKERDAGAPLLPNVFSGFNXXXX 242
            P   +HLFDGDGM+H+++I+ G A    R+ KT + ++E+  G P+ P      +    
Sbjct: 146 EPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSG 205

Query: 243 XXXXXXXXXXXILSGQFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETV 302
                       L G  N  NG+G+AN  L +F NRL A+ E DLPY +++T  GD++TV
Sbjct: 206 IARLMLFYARG-LCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTV 264

Query: 303 GRHDFDGKLFFSMTAHPKIDLETGETFAFRYAPI-PPFLTY 342
           GR+DFDG+L  +M AHPK+D  T E  A  Y  +  P+L Y
Sbjct: 265 GRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKY 305


>AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3
           (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3);
           9-cis-epoxycarotenoid dioxygenase | chr3:4831678-4833477
           REVERSE
          Length = 599

 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 122/212 (57%), Gaps = 2/212 (0%)

Query: 132 PLKPGVDPGHVLSDNFAPVDELPPTDCEVIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLF 191
           PL    DP   ++ NFAPV+E P      + G LP  + G Y+RNG NP + P   +H F
Sbjct: 112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFF 171

Query: 192 DGDGMLHSIRISQGKAKLCSRYVKTYKYIKERDAGAPLLPNVFSGFNXXXXXXXXXXXXX 251
           DGDGM+H+++   G A    R+ +T ++++ER  G P+ P      +             
Sbjct: 172 DGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYA 231

Query: 252 XXILSGQFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETVGRHDFDGKL 311
               +G  +PA+G G+AN  L +F  RL A+ E DLPY V++TPNGD++TVGR DFDG+L
Sbjct: 232 RAA-AGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQL 290

Query: 312 FFSMTAHPKIDLETGETFAFRYAPI-PPFLTY 342
             +M AHPK+D E+GE FA  Y  +  P+L Y
Sbjct: 291 ESTMIAHPKVDPESGELFALSYDVVSKPYLKY 322


>AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9
           (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9);
           9-cis-epoxycarotenoid dioxygenase |
           chr1:29490895-29492868 REVERSE
          Length = 657

 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 115/206 (55%), Gaps = 2/206 (0%)

Query: 138 DPGHVLSDNFAPVDELPPTDCEVIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGML 197
           DP   ++ NF PV E P      + G++P C+ G Y+RNG NP + P   +HLFDGDGM+
Sbjct: 178 DPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMV 237

Query: 198 HSIRISQGKAKLCSRYVKTYKYIKERDAGAPLLPNVFSGFNXXXXXXXXXXXXXXXILSG 257
           H++R   G      R+ +T + ++ER+ G P+ P      +               +  G
Sbjct: 238 HAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLF-G 296

Query: 258 QFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETVGRHDFDGKLFFSMTA 317
             +P  G+G+AN  L +F   L A+ E DLPY V++T  GD+ET GR+DFDG+L  +M A
Sbjct: 297 LVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIA 356

Query: 318 HPKIDLETGETFAFRYAPI-PPFLTY 342
           HPKID ET E FA  Y  +  P+L Y
Sbjct: 357 HPKIDPETRELFALSYDVVSKPYLKY 382


>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1
           (CAROTENOID CLEAVAGE DIOXYGENASE 1);
           9-cis-epoxycarotenoid dioxygenase |
           chr3:23452940-23455896 FORWARD
          Length = 538

 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 118/207 (57%), Gaps = 7/207 (3%)

Query: 139 PGHVLSDNFAPV-DELPPTDCEVIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLFDGDGML 197
           P H LS NFAP+ DE PP     + G LP CL+G ++R GPNP++     YH FDGDGM+
Sbjct: 44  PLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMI 103

Query: 198 HSIRISQGKAKLCSRYVKTYKYIKERDAGAPLLPNV--FSGFNXXXXXXXXXXXXXXXIL 255
           H +RI  GKA   SRYVKT +  +E   GA     +    GF                IL
Sbjct: 104 HGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL 163

Query: 256 SGQFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETVGRHDFDGKLFFSM 315
              +    G G ANT+L +   +L AL E+D PYV+++  +GD++T+G  D+D +L  S 
Sbjct: 164 DNTY----GNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSF 219

Query: 316 TAHPKIDLETGETFAFRYAPIPPFLTY 342
           TAHPK+D  TGE F F Y+  PP+LTY
Sbjct: 220 TAHPKVDPVTGEMFTFGYSHTPPYLTY 246


>AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6
           (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6);
           9-cis-epoxycarotenoid dioxygenase | chr3:8761439-8763172
           FORWARD
          Length = 577

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 132 PLKPGVDPGHVLSDNFAPVDELPPTDCEVIEGSLPSCLDGAYIRNGPNPQYLPKGPYHLF 191
           PL    DP   LS NFAPV+E P  +   + G +PSCL G YIRNG NP + P   +HLF
Sbjct: 90  PLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLF 149

Query: 192 DGDGMLHSIRIS-QGKAKLCSRYVKTYKYIKERDAGAPLLPNVFSGFNXXXXXXXXXXXX 250
           DGDGM+H++ I    +     RY KT + ++E   G  + P      +            
Sbjct: 150 DGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFT 209

Query: 251 XXXILSGQFNPANGIGLANTSLAFFGNRLYALGESDLPYVVRLTPNGDIETVGRHDFDGK 310
               + G  +   G+G+AN  + FF  RL A+ E DLPY V++   GD+ET+GR  FD +
Sbjct: 210 ARAGI-GLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQ 268

Query: 311 LFFSMTAHPKIDLETGETFAFRYAPI-PPFLTY 342
           +  S+ AHPK+D  TG+     Y  +  P L Y
Sbjct: 269 IDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRY 301